Helicobacter pylori PZ5009-3A2 |
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Putative Helicobacter pylori PZ5009-3A2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,657,103 bp
GenBank #: MSYO00000000 (NZ_MSYO00000000)
REBASE acronym: Hpy5009
Org_num: 24016
All begin BV499_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5460 | phosphatase PAP2 family protein | |||
| 5465 | M | type I restriction endonuclease | M1.Hpy5009ORF5465P | |
| 5470 | M | M.HpySP107ORF2375P (92% identity) | M.Hpy5009ORF5465P | |
| ??? | S | Restriction endonuclease subunit M | S1.Hpy5009ORF5465P | |
| 5480 | S | S.HpyLI12ORF4060P (87% identity) | S2.Hpy5009ORF5465P | |
| 5485 | R | HpyC212ORF4105P (93% identity) | Hpy5009ORF5465P | |
| 5490 | hydroxyethylthiazole kinase | |||
| 5770 | cadmium-translocating P-type ATPase | |||
| 5775 | S | S.HpyG012ORF4040P (63% identity) | S.Hpy5009ORF5775P | |
| 5780 | 52 aa hypothetical protein | |||
| 3155 | RNA degradosome polyphosphate kinase | |||
| 3165 | S | S.HpyCOL307ORF2120P (100% identity) | S.Hpy5009ORF3170P | |
| 3170 | M | M.HpySP510XVI (97% identity) | M.Hpy5009ORF3170P | |
| 3175 | R | HpySW22ORF4040P (87% identity) | Hpy5009ORF3170P | |
| 3180 | 631 aa hypothetical protein | |||
| 1180 | metal-dependent hydrolase | |||
| 1185 | R | HpyCOL301ORF7495P (95% identity) | Hpy5009ORF1190P | |
| 1190 | M | M.HpyCOL306XIII (95% identity) | M.Hpy5009ORF1190P | |
| 1195 | S | S.HpyH009XIII (98% identity) | S.Hpy5009ORF1190P | |
| 1200 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7980 | catalase | |||
| 7985 | R | Hpy449ORF7920P (100% identity) | Hpy5009ORF7990P | |
| 7990 | M | M.HpyCOL113ORF2285P (100% identity) | ACGT | M.Hpy5009ORF7990P |
| 7995 | restriction endonuclease | |||
| 7750 | 144 aa hypothetical protein | |||
| 7755 | M | M.HpyPE101XV (98% identity) | M.Hpy5009ORF7755P | |
| 7760 | flagellar biosynthesis protein FlgM | |||
| 7990 | DNA (cytosine-5-)-methyltransferase | |||
| 7995 | R | HpyP104XVP (100% identity) | ACNGT | Hpy5009ORF8000P |
| 8000 | M | M.HpyF009II (99% identity) | ACNGT | M.Hpy5009ORF8000P |
| 8005 | GTP-binding protein TypA | |||
| 520 | DNA cytosine methyltransferase | |||
| 525 | R | HpyDO5IVP (100% identity) | CCTC | Hpy5009ORF530P |
| 530 | DNA (cytosine-5-)-methyltransferase | |||
| 535 | M | M2.HpyCOL318IIP (100% identity) | CCTC | M2.Hpy5009ORF530P |
| 540 | agmatine deiminase | |||
| 8010 | glycosyltransferase 9 family protein | |||
| 8015 | M | M.HpySP804II (97% identity) | ATTAAT | M.Hpy5009ORF8015P |
| 6900 | acetyl-CoA carboxylase biotin carboxylase | |||
| ??? | M | M.Hpy5033ORFAP (100% identity) | TCNNGA | M.Hpy5009ORFAP |
| 6910 | R | HpyPE104ORF5415P (100% identity) | TCNNGA | Hpy5009ORFAP |
| 6915 | Laminin subunit alpha-2 precursor | |||
| 7945 | purine-nucleoside phosphorylase | |||
| ??? | R | HpyF17I (100% identity) | TCNGA | Hpy5009ORF7955P |
| 7955 | M | M.HpySP318XIV (99% identity) | TCNGA | M.Hpy5009ORF7955P |
| 7960 | 0 aa hypothetical protein | |||
| 2475 | ATP-dependent DNA helicase | |||
| 2480 | M | M.HpyLIM6VIII (98% identity) | GTNNAC | M.Hpy5009ORF2480P |
| 2485 | R | HpyBR25IXP (96% identity) | Hpy5009ORF2480P | |
| 2490 | flagellar hook protein FlgE | |||
| 7170 | site-specific DNA-methyltransferase | |||
| 7175 | M | M1.HpyK114VIII (100% identity) | GAAGA | M.Hpy5009ORF7175P |
| 7180 | site-specific DNA-methyltransferase | |||
| 1750 | acetone carboxylase subunit gamma | |||
| ??? | R | HpyCOL114IIIP (100% identity) | Hpy5009ORF1760P | |
| 1760 | M | M.HpySP314IV (99% identity) | CCNNGG | M.Hpy5009ORF1760P |
| 1765 | 3-5 exonuclease | |||
| 7175 | restriction endonuclease subunit M | |||
| 7180 | M | M1.HpySP801VIII (99% identity) | GAAGA | M.Hpy5009ORF7180P |
| 7185 | R | HpyPO12VIIP (98% identity) | GAAGA | Hpy5009ORF7180P |
| 7190 | two-component system response regulator | |||
| 7540 | 406 aa hypothetical protein | |||
| 7545 | R | HpyDO3IXP (98% identity) | Hpy5009ORF7550P | |
| 7550 | M | M.HpyCOL109VII (100% identity) | GTAC | M.Hpy5009ORF7550P |
| 7555 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 290 | hydrolase | |||
| 295 | M | M.HpyNCI40I (93% identity) | CATG | M.Hpy5009ORF295P |
| 300 | IceA2 protein | |||
| 4290 | alpha-1,2-fucosyltransferase | |||
| 4295 | M | M.Hpy355ORF6175P (99% identity) | GATC | M.Hpy5009ORF4295P |
| 4300 | R | Hpy355ORF6175P (99% identity) | Hpy5009ORF4295P | |
| 4310 | malonyl CoA-acyl carrier protein transacylase | |||
| 2110 | exodeoxyribonuclease VII large subunit | |||
| 2115 | M | M.Hpy355ORF2335P (97% identity) | TCGA | M.Hpy5009ORF2115P |
| 2120 | 69 aa hypothetical protein | |||
| 2120 | 69 aa hypothetical protein | |||
| 2125 | R | HpyU302ORF4735P (98% identity) | Hpy5009ORF2130P | |
| 2130 | M | M.HpyCOL307ORF1265P (99% identity) | M.Hpy5009ORF2130P | |
| 2135 | ATP-dependent chaperone ClpB | |||
| 7245 | nicotinate-nucleotide diphosphorylase | |||
| 7250 | RM | HpyCOL121ORF6700P (95% identity) | Hpy5009ORF7250P | |
| 7255 | DNA methyltransferase | |||
| 7250 | DNA methyltransferase | |||
| 7255 | M | M.HpySORF7000P (98% identity) | GANTC | M.Hpy5009ORF7255P |
| 7260 | R | HpyCOL114VIIP (97% identity) | GANTC | Hpy5009ORF7255P |
| 7265 | peptidase S41 | |||
| 1855 | 823 aa hypothetical protein | |||
| ??? | RM | HpyISR10ORF3240P (91% identity) | Hpy5009ORF1860P | |
| 1870 | glycerol-3-phosphate dehydrogenase | |||
| 4740 | pseudaminic acid synthase | |||
| 4745 | R | R2.HpySP507ORF860P (99% identity) | Hpy5009ORF4760P | |
| 4750 | AAA family ATPase | |||
| 4755 | 256 aa hypothetical protein | |||
| 4760 | M | M1.HpyCRI3ORF1120P (100% identity) | M.Hpy5009ORF4760P | |
| 4765 | elongation factor P | |||
| 1090 | translation elongation factor Ts | |||
| 1095 | R | HpyCOL114XIIIP (94% identity) | Hpy5009ORF1100P | |
| 1100 | M | M.Hpy397ORF600P (100% identity) | TGCA | M.Hpy5009ORF1100P |
| 1105 | 68 aa hypothetical protein | |||
| 1265 | DEAD/DEAH box helicase | |||
| 1270 | RM | HpyCOL2XI (66% identity) | Hpy5009ORF1270P | |
| 1275 | 69 aa hypothetical protein | |||
| 1480 | amidophosphoribosyltransferase | |||
| 1485 | RM | HpyB45ORFDP (97% identity) | Hpy5009ORF1485P | |
| 1490 | S | S.Hpy35ORF20067P (93% identity) | S.Hpy5009ORF1485P | |
| 1495 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7085 | biotin synthase BioB | |||
| ??? | R | M.Hpy355ORF8045P (54% identity) | Hpy5009ORF7100P | |
| 7100 | M | M.HpyNP06ORF6510P (95% identity) | M.Hpy5009ORF7100P | |
| 7105 | endonuclease | |||
| 7160 | rod shape-determining protein MreC | |||
| 7165 | R | HpyMTT03ORFKP (94% identity) | Hpy5009ORF7170P | |
| 7170 | M | M.HpyCOL210ORF6680P (96% identity) | M.Hpy5009ORF7170P | |
| 7175 | restriction endonuclease subunit M | |||
| 1255 | ATP-dependent DNA helicase RecG | |||
| 1260 | M | M.HpyAL9ORF7100P (96% identity) | M.Hpy5009ORF1260P | |
| 1265 | R | HpyS300ORF2995P (95% identity) | Hpy5009ORF1260P | |
| 1270 | restriction endonuclease | |||