Helicobacter pylori PZ5005_3A3 |
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Putative Helicobacter pylori PZ5005_3A3 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,662,517 bp
GenBank #: MTWJ00000000 (NZ_MTWJ00000000)
REBASE acronym: Hpy5005
Org_num: 24014
All begin BZK19_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4930 | type I restriction endonuclease subunit S | |||
| 4935 | M | M.HpyMT5114ORF4065P (92% identity) | M.Hpy5005ORF4935P | |
| 4940 | type I restriction endonuclease | |||
| ??? | R | HpyMT5135ORF4055P (99% identity) | Hpy5005ORF7490P | |
| 7500 | hydroxyethylthiazole kinase | |||
| 8245 | S | S.HpyKG6IV (41% identity) | S.Hpy5005ORF8245P | |
| 1770 | 631 aa hypothetical protein | |||
| 1775 | R | HpyLI06XIVP (92% identity) | Hpy5005ORF1780P | |
| 1780 | M | M.HpyKH18ORFJP (96% identity) | M.Hpy5005ORF1780P | |
| 1785 | S | S.Hpy5024ORF4850P (100% identity) | S.Hpy5005ORF1780P | |
| 1790 | 0 aa hypothetical protein | |||
| 4725 | metal-dependent hydrolase | |||
| 4730 | R | HpyCOL208ORF6835P (96% identity) | Hpy5005ORF4735P | |
| 4735 | M | M.HpyCOL208ORF6835P (99% identity) | M.Hpy5005ORF4735P | |
| 4740 | S | S.HpyH015XVII (97% identity) | S.Hpy5005ORF4735P | |
| 4745 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3510 | M | DNA adenine methylase | M1.Hpy5005ORF3510P | |
| 3515 | M | M2.HpyCOL208IV (100% identity) | CCATC | M2.Hpy5005ORF3510P |
| 3520 | permease | |||
| ??? | RM | HpyCA4ORF6550P (85% identity) | Hpy5005ORF4575P | |
| 4590 | nicotinate-nucleotide diphosphorylase | |||
| 7995 | M | M.HpyCOL208III (100% identity) | ATTAAT | M.Hpy5005ORF7995P |
| 8000 | glycosyltransferase 9 family protein | |||
| 5305 | M | M.Hpy5024ORF790P (100% identity) | GANTC | M.Hpy5005ORF5305P |
| 5310 | R | Hpy5024ORF790P (100% identity) | GANTC | Hpy5005ORF5305P |
| 5315 | peptidase S41 | |||
| 8005 | GTP-binding protein TypA | |||
| 8010 | M | M.HpySP413II (99% identity) | ACNGT | M.Hpy5005ORF8010P |
| 8015 | R | Hpy5033ORF7680P (98% identity) | ACNGT | Hpy5005ORF8010P |
| 8020 | DNA (cytosine-5-)-methyltransferase | |||
| 8015 | restriction endonuclease | |||
| 8020 | M | M.HpyGCT43ORF7435P (99% identity) | ACGT | M.Hpy5005ORF8020P |
| 8025 | R | Hpy340ORF7150P (98% identity) | ACGT | Hpy5005ORF8020P |
| 8030 | catalase | |||
| 6525 | flagellar hook protein FlgE | |||
| ??? | R | HpyCOL208XIIIP (100% identity) | Hpy5005ORF6535P | |
| 6535 | M | M.HpyCOL208XIII (97% identity) | GTNNAC | M.Hpy5005ORF6535P |
| 6540 | ATP-dependent DNA helicase | |||
| 610 | acetyl-CoA carboxylase biotin carboxylase | |||
| ??? | M | M.Hpy5024ORF2725P (88% identity) | M.Hpy5005ORF615P | |
| 620 | R | Hpy5024ORF2725P (100% identity) | Hpy5005ORF615P | |
| 625 | Laminin subunit alpha-2 precursor | |||
| 4640 | two-component system response regulator | |||
| ??? | R | Hpy5024ORF4505P (99% identity) | Hpy5005ORF4645P | |
| 4650 | 68 aa hypothetical protein | |||
| 6335 | glycerol-3-phosphate dehydrogenase | |||
| 6340 | RM | HpyDO11ORF3180P (77% identity) | Hpy5005ORF6340P | |
| 6345 | 0 aa hypothetical protein | |||
| 7435 | flagellar biosynthesis protein FlgM | |||
| ??? | M | M.HpyCOL208XVII (100% identity) | GCGC | M.Hpy5005ORF7440P |
| 7445 | 144 aa hypothetical protein | |||
| 5720 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 5725 | R | HpyU420VIP (100% identity) | GAATTC | Hpy5005ORF5730P |
| 5730 | M | M.HpyU003VII (100% identity) | GAATTC | M.Hpy5005ORF5730P |
| 5735 | lipopolysaccharide 1,2-glucosyltransferase | |||
| ??? | hypothetical protein | |||
| 4310 | M | M.HpyCOL208ORF7585P (99% identity) | M.Hpy5005ORF4310P | |
| 4315 | glycosyl transferase 8 family protein | |||
| 3645 | amidophosphoribosyltransferase | |||
| 3650 | RM | HpyMT5111ORF7145P (100% identity) | Hpy5005ORF3650P | |
| 3655 | S | S.HpyMT5111ORF7145P (100% identity) | S.Hpy5005ORF3650P | |
| 3660 | DNA polymerase I | |||
| 1850 | response regulator | |||
| 1855 | C | C2.HpyU005IVP (98% identity) | C.Hpy5005ORF1865P | |
| 1860 | R | HpySP308VIIP (100% identity) | Hpy5005ORF1865P | |
| 1865 | M | M2.HpyME27ORF2110P (100% identity) | M1.Hpy5005ORF1865P | |
| 1870 | M | M1.HpyT005ORF2145P (100% identity) | M2.Hpy5005ORF1865P | |
| 1875 | transcriptional regulator | |||
| 3995 | 0 aa hypothetical protein | |||
| 4000 | M | M.HpyCOL208XV (99% identity) | TCNGA | M.Hpy5005ORF4000P |
| ??? | R | Hpy5024ORF8175P (100% identity) | TCNGA | Hpy5005ORF4000P |
| 4010 | purine-nucleoside phosphorylase | |||
| 6445 | 3-5 exonuclease | |||
| 6450 | M | M.Hpy5024ORF3305P (99% identity) | M.Hpy5005ORF6450P | |
| ??? | R | HpyU418ORF3265P (99% identity) | Hpy5005ORF6450P | |
| 6465 | acetone carboxylase subunit gamma | |||
| 250 | ATP-dependent chaperone ClpB | |||
| 255 | M | M.HpyU434IV (100% identity) | CCGG | M.Hpy5005ORF255P |
| 260 | R | HpyMT5111ORF1270P (86% identity) | CCGG | Hpy5005ORF255P |
| 265 | 0 aa hypothetical protein | |||
| 4825 | 34 aa hypothetical protein | |||
| 4830 | RM | Hpy5024ORF9440P (99% identity) | Hpy5005ORF4830P | |
| 4835 | 0 aa hypothetical protein | |||
| 265 | 0 aa hypothetical protein | |||
| 270 | M | M.Hpy3250ORF70P (98% identity) | TCGA | M.Hpy5005ORF270P |
| 275 | exodeoxyribonuclease VII large subunit | |||
| 4185 | hydrolase | |||
| 4190 | M | M.HpyMT5105I (100% identity) | CATG | M.Hpy5005ORF4190P |
| 4195 | IceA2 protein | |||
| 4915 | 388 aa hypothetical protein | |||
| 4920 | R | HpyCOL208IVP (100% identity) | Hpy5005ORF4925P | |
| 4925 | M | M1.HpyCOL208IV (66% identity) | M.Hpy5005ORF4925P | |
| 3005 | alpha-1,2-fucosyltransferase | |||
| 3010 | M | M.HpyMT5114VII (99% identity) | GATC | M.Hpy5005ORF3010P |
| 3015 | R | Hpy5024ORF3655P (100% identity) | GATC | Hpy5005ORF3010P |
| 3025 | malonyl CoA-acyl carrier protein transacylase | |||
| 1265 | 406 aa hypothetical protein | |||
| ??? | R | Hpy9310ORFD1P (95% identity) | Hpy5005ORF1280P | |
| 1280 | M | M.Hpy5024ORF6275P (100% identity) | GTAC | M.Hpy5005ORF1280P |
| 1285 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3215 | sodium/proline symporter | |||
| 3220 | M | M.Hpy5024ORF650P (100% identity) | CCTTC | M.Hpy5005ORF3220P |
| 3225 | R | HpyMT5105IVP (100% identity) | Hpy5005ORF3220P | |
| 3230 | restriction endonuclease | |||
| 3225 | restriction endonuclease | |||
| 3230 | M | M1.Hpy5024ORF635P (99% identity) | CCTC | M1.Hpy5005ORF3230P |
| 3235 | DNA methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4220 | biotin synthase BioB | |||
| ??? | R | HpyCOL208ORF7510P (93% identity) | Hpy5005ORF4230P | |
| 4230 | M | M.Hpy5024ORF9310P (100% identity) | M.Hpy5005ORF4230P | |
| 4235 | endonuclease | |||
| 4290 | rod shape-determining protein MreC | |||
| 4295 | R | HpyCOL208ORF7580P (99% identity) | Hpy5005ORF4300P | |
| ??? | M | M.Hpy12823ORF1522P (93% identity) | M.Hpy5005ORF4300P | |
| 4310 | restriction endonuclease subunit M | |||
| 4800 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy5024ORF3870P (70% identity) | M.Hpy5005ORF4805P | |
| 4815 | R | Hpy5006ORF3570P (96% identity) | Hpy5005ORF4805P | |
| 4820 | 720 aa hypothetical protein | |||