Helicobacter pylori G272 |
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Putative Helicobacter pylori G272 RM systems
Ref: Wang,Q. unpublished
REBASE ref # 24904
Complete sequence: 1,576,133 bp
GenBank #: CP022409
REBASE acronym: HpyG272
Org_num: 25351
All begin CGC32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4485 | 499 aa hypothetical protein | |||
| 4490 | S | S.HpyJA114ORF2830P (48% identity) | S.HpyG272ORF4490P | |
| 4495 | cadmium-translocating P-type ATPase | |||
| 4785 | hydroxyethylthiazole kinase | |||
| 4790 | R | HpyT029ORF2685P (94% identity) | HpyG272ORF4800P | |
| 4795 | S | S.HpyPE130ORF3170P (94% identity) | S.HpyG272ORF4800P | |
| 4800 | M | M.HpyKG10ORF2500P (95% identity) | M.HpyG272ORF4800P | |
| 4805 | DNA (cytosine-5-)-methyltransferase | |||
| 5080 | 631 aa hypothetical protein | |||
| 5085 | R | HpyJA112ORF4390P (94% identity) | HpyG272ORF5090P | |
| 5090 | M | M.HpyC006ORF2240P (95% identity) | M.HpyG272ORF5090P | |
| 5095 | S | S.HpyF016ORF2145P (98% identity) | S.HpyG272ORF5090P | |
| 5105 | RNA degradosome polyphosphate kinase | |||
| 7770 | metal-dependent hydrolase | |||
| 7775 | R | Hpyfe74ORF7605P (97% identity) | CRTANNNNNNRTTT | HpyG272XIVP |
| 7780 | M | M.HpyV008ORF7200P (96% identity) | CRTANNNNNNRTTT | M.HpyG272XIV |
| 7785 | S | S.HpyK010IX (98% identity) | CRTANNNNNNRTTT | S.HpyG272XIV |
| 7790 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyK012XVI (92% identity) | GAAAAG | HpyG272XV |
| 60 | transcription termination/antitermination | |||
| 125 | 388 aa hypothetical protein | |||
| 130 | R | HpyBS281ORF140P (97% identity) | CCATC | HpyG272XIIP |
| 135 | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyG272XII |
| 140 | M | M1.HpySG03IV (99% identity) | CCATC | M1.HpyG272XII |
| 145 | YjgP/YjgQ family permease | |||
| 270 | amidophosphoribosyltransferase | |||
| 275 | RM | HpyQ59ORFTP (98% identity) | HpyG272ORF275P | |
| ??? | S | S.HpyU425ORF6960P (51% identity) | S1.HpyG272ORF275P | |
| ??? | S | S.HpyK020ORF7220P (47% identity) | S2.HpyG272ORF275P | |
| 285 | DNA polymerase I | |||
| 1450 | 47 aa hypothetical protein | |||
| 1455 | R | R1.HpyK119IP (96% identity) | CATG | HpyG272IP |
| 1460 | M | M.HpyU011I (98% identity) | CATG | M.HpyG272I |
| 1465 | hydrolase | |||
| 1915 | flagellar biosynthesis protein FlgM | |||
| 1925 | M | M.Hpyfe107ORF6245P (96% identity) | GCGC | M.HpyG272ORF1925P |
| 1930 | 144 aa hypothetical protein | |||
| 2100 | Laminin subunit alpha-2 precursor | |||
| 2105 | R | HpyNP13XIIP (100% identity) | TCNNGA | HpyG272VIP |
| 2110 | M | M.HpyCHN9XII (100% identity) | TCNNGA | M.HpyG272VI |
| 2115 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2795 | ATP-dependent DNA helicase | |||
| 2800 | M | M.HpyBGR10ORF4235P (97% identity) | GTNNAC | M.HpyG272IX |
| 2805 | R | Hpy928ORFTP (93% identity) | GTNNAC | HpyG272IXP |
| 2810 | flagellar hook protein FlgE | |||
| 3035 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3040 | M | M.HpyK051VI (97% identity) | GTAC | M.HpyG272V |
| 3045 | R | Hpyfe2ORF2875P (100% identity) | GTAC | HpyG272VP |
| 3050 | endopeptidase | |||
| 3890 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | Hpyfe32ORF3935P (24% identity) | HpyG272ORF3895AP | |
| 3900 | RM | Hpy192ORFHP (70% identity) | HpyG272ORF3895BP | |
| 3905 | 270 aa hypothetical protein | |||
| 4630 | osmoprotection protein | |||
| 4635 | R | Hpyfe8ORF2470P (100% identity) | CGWCG | HpyG272XIP |
| 4640 | M | M.Hpyfe8ORF2470P (100% identity) | CGWCG | M.HpyG272XI |
| 4645 | osmoprotection protein | |||
| 4800 | type I restriction-modification system subunit | |||
| 4805 | M | M.HpyBG1ORF2295P (99% identity) | M.HpyG272ORF4805P | |
| 4810 | R | HpyPE19ORF2445P (98% identity) | HpyG272ORF4805P | |
| 4815 | phosphatase PAP2 family protein | |||
| 4975 | 63 aa hypothetical protein | |||
| 4980 | R | Hpyfe33ORF4780P (99% identity) | ACNGT | HpyG272VIIP |
| 4985 | M | M.Hpyfe76ORF4780P (100% identity) | ACNGT | M.HpyG272VII |
| 4990 | translational GTPase TypA | |||
| 5000 | 277 aa hypothetical protein | |||
| 5005 | M | M.HpyK021II (97% identity) | ATTAAT | M.HpyG272X |
| 5010 | 367 aa hypothetical protein | |||
| 5730 | 119 aa hypothetical protein | |||
| 5735 | M | M.HpyMA12ORF5140P (94% identity) | M.HpyG272ORF5735P | |
| 5740 | R | Hpyfe110ORF5990P (98% identity) | HpyG272ORF5735P | |
| 5745 | polysaccharide deacetylase | |||
| 5975 | ATP-dependent chaperone ClpB | |||
| 5980 | M | M.HpyP002XV (99% identity) | CCGG | M.HpyG272VIII |
| 5985 | R | HpyJ182ORF2370P (97% identity) | CCGG | HpyG272VIIIP |
| 5990 | 204 aa hypothetical protein | |||
| 5990 | 204 aa hypothetical protein | |||
| 5995 | M | M.Hpy464ORF1300P (98% identity) | TCGA | M.HpyG272ORF5995P |
| 6000 | exodeoxyribonuclease VII large subunit | |||
| 6415 | pseudaminic acid synthase | |||
| 6420 | R | R2.Hpyfe11ORF1535P (96% identity) | HpyG272ORF6435P | |
| 6425 | AAA family ATPase | |||
| 6430 | 198 aa hypothetical protein | |||
| 6435 | M | M1.HpyTW10ORF970P (98% identity) | M.HpyG272ORF6435P | |
| 6440 | elongation factor P | |||
| 6850 | alpha-1,2-fucosyltransferase | |||
| 6855 | M | M.HpySW14VII (96% identity) | GATC | M.HpyG272III |
| 6860 | 0 aa hypothetical protein | |||
| 6880 | 102 aa hypothetical protein | |||
| 6885 | M | site-specific DNA-methyltransferase | M.HpyG272ORF6885P | |
| 6890 | 0 aa hypothetical protein | |||
| 7085 | DNA (cytosine-5-)-methyltransferase | |||
| 7090 | M | M2.HpyCHN4IVP (97% identity) | CCTC | M2.HpyG272ORF7085P |
| 7095 | 242 aa hypothetical protein | |||
| 7130 | peptidase S41 | |||
| 7135 | R | HpyT010VIP (98% identity) | GANTC | HpyG272IVP |
| 7140 | M | M.Hpy1136ORFKP (99% identity) | GANTC | M.HpyG272IV |
| 7145 | DNA methyltransferase | |||
| 7140 | DNA methyltransferase | |||
| ??? | RM | HpyHP26ORFEAP (69% identity) | HpyG272ORF7150P | |
| 7155 | nicotinate-nucleotide diphosphorylase | |||
| 7205 | two-component system response regulator | |||
| 7210 | R | Hpyfe23ORF7115P (98% identity) | GAAGA | HpyG272IIP |
| 7215 | M | M2.Hpyfe112ORF7190P (99% identity) | GAAGA | M1.HpyG272II |
| 7220 | M | M1.HpyCHN5VI (99% identity) | GAAGA | M2.HpyG272II |
| 7225 | site-specific DNA-methyltransferase | |||
| 7685 | 152 aa hypothetical protein | |||
| 7690 | R | HpyP87ORFLP (93% identity) | TGCA | HpyG272XIIIP |
| 7695 | M | M.HpyV003X (98% identity) | TGCA | M.HpyG272XIII |
| 7700 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyJA113ORF7250P (95% identity) | M.HpyG272ORF40P | |
| 45 | R | HpyK043ORF7155P (95% identity) | HpyG272ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 635 | type III restriction endonuclease subunit R | |||
| 640 | R | HpyR09ORF6745P (91% identity) | HpyG272ORF645P | |
| 645 | M | M.Hpyfe17ORF2155P (96% identity) | M.HpyG272ORF645P | |
| 650 | endonuclease | |||
| 7220 | restriction endonuclease subunit M | |||
| 7225 | M | M.HpyM5CORFQP (95% identity) | M.HpyG272ORF7225P | |
| 7230 | R | HpyP003ORF6320P (93% identity) | HpyG272ORF7225P | |
| 7235 | rod shape-determining protein MreC | |||