Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 RM systems
Ref: Kingsley,R.A. et al. Genome Res. 19 (12), 2279-2287 (2009)
REBASE ref # 11318
| Sequence length: | GenBank #: | |
| Chromosome: | 4,879,400 bp | FN424405 |
| plasmid pSLT-BT: | 117,047 bp | FN432031 (NC_013437) |
REBASE acronym: Sen23580
Org_num: 5648
All begin SLT-BT, STMMW_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 44691 | endoribonuclease | |||
| 44701 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen23580ORF44711P |
| 44711 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen23580ORF44711P |
| 44721 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen23580ORF44711P |
| 44731 | mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19691 | membrane protein | |||
| 19701 | V | V.StyUK1DcmP (100% identity) | V.Sen23580DcmP | |
| 19711 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen23580DcmP |
| 19721 | 231 aa conserved hypothetical protein | |||
| 20181 | crossover junction endodeoxyribonuclease rusa | |||
| 20191 | M | M.StyUK1V (100% identity) | GATC | M.Sen23580ORF20191P |
| 20201 | predicted phage protein | |||
| 33831 | Fis DNA-binding protein | |||
| 33841 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen23580ORF33841P |
| 33851 | exported protein | |||
| 34731 | ribulose-phosphate 3-epimerase | |||
| 34741 | M | DNA adenine methylase | GATC | M.Sen23580DamP |
| 34751 | DamX protein | |||
| 44391 | ABC-type sugar/spermidine/putrescine | |||
| 44401 | RM | StyUK1IV (100% identity) | GATCAG | Sen23580ORF44401P |
| 44411 | ATPase | |||
| plasmid pSLT-BT | ||||
| 661 | 95 aa hypothetical protein | |||
| 671 | M | M.StyUK1ORFAP (100% identity) | M.Sen23580ORF70P | |
| 672 | 137 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4261 | metabolite transport protein | |||
| 4271 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen23580ORF4271P |
| 4281 | R | StyUK1IP (99% identity) | CAGAG | Sen23580ORF4271P |
| 4291 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 44721 | type III restriction enzyme | |||
| 44731 | R | StyUK1MrrP (100% identity) | Sen23580MrrP | |
| 44741 | 95 aa hypothetical protein | |||