Pseudomonas aeruginosa PA83 |
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Putative Pseudomonas aeruginosa PA83 RM systems
Ref: Regenbogen,B. et al. Antimicrob. Agents Chemother. (2017) In press
REBASE ref # 24829
| Sequence length: | GenBank #: | |
| Chromosome: | 6,816,227 bp | CP017293 |
| plasmid unnamed1: | 398,087 bp | CP017294 |
REBASE acronym: PaePA83
Org_num: 25253
All begin PSA83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 273 | WLM domain protein | |||
| 274 | R | PaeXP23ORF33520P (100% identity) | TCCANNNNNNCGT | PaePA83IIP |
| 275 | death-on-curing family protein | |||
| 276 | 407 aa hypothetical protein | |||
| 277 | S | S.PaeXP23ORF33520P (100% identity) | TCCANNNNNNCGT | S.PaePA83II |
| 278 | M | M.PaeXP23ORF33520P (100% identity) | TCCANNNNNNCGT | M.PaePA83II |
| 279 | type I restriction-modification system subunit | |||
| 6036 | 358 aa hypothetical protein | |||
| 6037 | S | S.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | S.PaePA83I |
| 6038 | M | M.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | M.PaePA83I |
| 6039 | 313 aa hypothetical protein | |||
| 6040 | R | PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | PaePA83IP |
| 6041 | 215 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2670 | 252 aa hypothetical protein | |||
| 2671 | M | M.Paes32ORF3801P (100% identity) | M.PaePA83ORF2671P | |
| 2672 | DNA topoisomerase III | |||
| 4464 | nucleoid-associated protein NdpA | |||
| 4465 | M | M.PspAK6UORFCP (100% identity) | M.PaePA83ORF4465P | |
| 4466 | DNA binding protein | |||
| 4853 | 58 aa hypothetical protein | |||
| 4854 | M | M.PaeXP23ORF23840P (100% identity) | M.PaePA83ORF4854P | |
| 4855 | 58 aa hypothetical protein | |||
| 5325 | phage integrase family site specific | |||
| 5326 | M | M.Pfl11706ORFGP (99% identity) | GTCGAC | M.PaePA83III |
| 5327 | R | Pfl11706ORFGP (88% identity) | GTCGAC | PaePA83IIIP |
| 5328 | transposase mutator family protein | |||
| plasmid unnamed1 | ||||
| 6394 | 93 aa hypothetical protein | |||
| 6395 | M | M.PalMRCP2ORF2450P (98% identity) | M.PaePA83ORF6395P | |
| 6396 | 81 aa hypothetical protein | |||
| 6614 | 310 aa hypothetical protein | |||
| 6615 | M | M.PalMRCP2ORF360P (93% identity) | M.PaePA83ORF6615P | |
| 6616 | 319 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2373 | 224 aa hypothetical protein | |||
| ??? | M | M.PaeXP23ORF11340P (99% identity) | AGGAGY | M.PaePA83IV |
| 2375 | R | PaeXP23ORF11340P (100% identity) | AGGAGY | PaePA83IVP |
| 2376 | 367 aa hypothetical protein | |||