Escherichia coli PSUO78 |
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Putative Escherichia coli PSUO78 RM systems
Ref: Kurundu Hewage,E.M.K. et al. unpublished
REBASE ref # 24828
| Sequence length: | GenBank #: | |
| Chromosome: | 4,988,493 bp | CP012112 |
| plasmid pPSUO78_2: | 109,613 bp | CP012114 |
REBASE acronym: EcoPSUO78
Org_num: 25249
All begin ACJ76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15870 | transposase | |||
| 15875 | S | S.SflN101ORF19075P (100% identity) | S.EcoPSUO78ORF15880P | |
| 15880 | M | M.EcoCF341ORF25130P (97% identity) | M.EcoPSUO78ORF15880P | |
| 15885 | exported protein | |||
| 16035 | lactate utilization protein B/C | |||
| 16040 | R | EcoW087ORF4400P (100% identity) | EcoPSUO78ORF16050P | |
| 16045 | S | S.EcoWH398ORF26840P (100% identity) | S.EcoPSUO78ORF16050P | |
| 16050 | M | M.Ecos641ORF18845P (100% identity) | M.EcoPSUO78ORF16050P | |
| 16055 | pseudogene | |||
| 23880 | 540 aa hypothetical protein | |||
| 23885 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoPSUO78ORF23890P |
| 23890 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoPSUO78ORF23890P |
| 23895 | R | EcoE7ORF2410P (100% identity) | TGANNNNNNCTTC | EcoPSUO78ORF23890P |
| 23900 | pseudogene | |||
| 24380 | endoribonuclease SymE | |||
| 24385 | R | Ecos641ORF3050P (100% identity) | EcoPSUO78ORF24395P | |
| 24390 | S | S.Ecos641ORF3050P (100% identity) | S.EcoPSUO78ORF24395P | |
| 24395 | M | M.Ecos641ORF3050P (100% identity) | M.EcoPSUO78ORF24395P | |
| 24400 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4170 | P21 prophage-derived protein NinB | |||
| 4175 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoPSUO78ORF4175P |
| 4180 | protein ninE | |||
| 10540 | pseudogene | |||
| 10545 | V | V.EcosEC7DcmP (100% identity) | V.EcoPSUO78DcmP | |
| 10550 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoPSUO78DcmP |
| 10555 | hydrolase | |||
| 18045 | Fis family transcriptional regulator | |||
| 18050 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoPSUO78ORF18050P |
| 18055 | 59 aa hypothetical protein | |||
| 18655 | ribulose-phosphate 3-epimerase | |||
| 18660 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSUO78DamP |
| 18665 | cell division protein DamX | |||
| 21810 | 264 aa hypothetical protein | |||
| 21815 | M | M.Ecos641ORF25P (95% identity) | M.EcoPSUO78ORF21815P | |
| 21820 | pseudogene | |||
| plasmid pPSUO78_2 | ||||
| 25950 | pseudogene | |||
| 25955 | M | M.Ecos9ORF25140P (100% identity) | M.EcoPSUO78ORF25955P | |
| 25960 | 76 aa hypothetical protein | |||