Escherichia coli |
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Putative Escherichia coli RM systems
Ref: Yu,C. et al. unpublished
REBASE ref # 28860
| Sequence length: | GenBank #: | |
| chromosome EcMAD: | 4,747,851 bp | LR595691 |
| plasmid pEcMAD1: | 98,473 bp | LR595692 |
REBASE acronym: EcoMAD1
Org_num: 34924
All begin ECMAD_, ECMAD1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EcMAD | ||||
| 1075 | 238 aa hypothetical protein | |||
| 1076 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoMAD1ORF1080P |
| 1077 | 355 aa hypothetical protein | |||
| 1078 | 218 aa hypothetical protein | |||
| 1079 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoMAD1ORF1080P |
| 1080 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoMAD1ORF1080P |
| 1081 | 81 aa hypothetical protein | |||
| 2687 | Nucleoid occlusion protein | |||
| 2688 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoMAD1ORF2688P |
| 2689 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoMAD1ORF2688P |
| 2690 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoMAD1ORF2688P |
| 2691 | InsAB transposase | |||
| plasmid pEcMAD1 | ||||
| 39 | 73 aa hypothetical protein | |||
| 40 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoMAD1ORF40P |
| 41 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoMAD1ORF40P |
| 42 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoMAD1ORF40P |
| 43 | IS1 protein InsB | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EcMAD | ||||
| 2024 | membrane transport protein | |||
| 2025 | V | V.SsoSE61DcmP (100% identity) | V.EcoMAD1DcmP | |
| 2026 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoMAD1DcmP |
| 2027 | phosphohydrolase | |||
| 3344 | Fis DNA-binding transcriptional dual regulator | |||
| 3345 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoMAD1ORF3345P |
| 3346 | membrane protein | |||
| 3469 | ribulose-5-phosphate 3-epimerase | |||
| 3470 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoMAD1DamP |
| 3471 | cell division protein DamX | |||
| 4099 | 68 aa hypothetical protein | |||
| 4100 | M | M.EcosE2ORF21575P (100% identity) | M.EcoMAD1ORF4100P | |
| 4101 | 341 aa hypothetical protein | |||
| plasmid pEcMAD1 | ||||
| 59 | 308 aa hypothetical protein | |||
| 60 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoMAD1ORF60P |
| 61 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EcMAD | ||||
| 1217 | IS1 protein InsB | |||
| 1218 | R | EcoteDMcrBP (100% identity) | EcoMAD1McrBP | |
| 1219 | R | EcosEC27McrCP (100% identity) | EcoMAD1McrCP | |
| 1220 | isocitrate dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EcMAD | ||||
| 840 | 75 aa hypothetical protein | |||
| 841 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoMAD1ORF841P |
| 842 | 797 aa hypothetical protein | |||