Escherichia coli DH1 (J. Keasling) |
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Putative Escherichia coli DH1 (J. Keasling) RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 11356
Complete sequence: 4,630,707 bp
GenBank #: CP001637
REBASE acronym: EcoDH1
Org_num: 5631
All begin EcDH1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3646 | restriction endonuclease | |||
| 3647 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoDH1ORF3648BP |
| 3648 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoDH1ORF3648P |
| 3649 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoDH1ORF3648P |
| 3650 | Domain of unknown function DUF1813 HSP20-like | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 325 | Sporulation domain protein | |||
| 326 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDH1DamP |
| 327 | Ribulose-phosphate 3-epimerase | |||
| 443 | 59 aa conserved hypothetical protein | |||
| 444 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoDH1ORF444P |
| 445 | transcriptional regulator, Fis family | |||
| 1687 | metal dependent phosphohydrolase | |||
| 1688 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoDH1DcmP |
| 1689 | V | V.SflFF64DcmP (100% identity) | V.EcoDH1DcmP | |
| 1690 | carboxylate/amino acid/amine transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2487 | isocitrate dehydrogenase | |||
| 2488 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoDH1McrAP |
| 2489 | Resolvase domain protein | |||
| 3645 | cobalamin synthesis protein P47K | |||
| 3646 | R | SenHNK130MrrP (100% identity) | EcoDH1MrrP | |
| 3647 | type I restriction enzyme EcoKI subunit R | |||
| 3650 | Domain of unknown function DUF1813 HSP20-like | |||
| 3651 | R | Msa17McrB2P (100% identity) | EcoDH1McrBP | |
| 3652 | R | SenHNK130McrCP (100% identity) | EcoDH1McrCP | |
| 3653 | 906 aa hypothetical protein | |||