Helicobacter pylori 51 |
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Putative Helicobacter pylori 51 RM systems
Ref: Kim,S. et al. unpublished
REBASE ref # 11333
Complete sequence: 1,589,954 bp
GenBank #: CP000012
REBASE acronym: Hpy51
Org_num: 1522
All begin KHP_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 425 | 36 aa hypothetical protein | |||
| 426 | S | S.Hpy51NORFB1P (100% identity) | S.Hpy51ORF427P | |
| 427 | M | M.Hpy51NORFB1P (100% identity) | M.Hpy51ORF427P | |
| 428 | R | Hpy51NORFB1P (100% identity) | Hpy51ORF427P | |
| 429 | 631 aa hypothetical protein | |||
| 479 | integral membrane protein | |||
| 480 | M | M.Hpy51NORFC1P (92% identity) | M.Hpy51ORF480P | |
| 481 | S | S.Hpy51NORFC1P (100% identity) | S.Hpy51ORF480P | |
| 482 | R | Hpy51NORFC1P (86% identity) | Hpy51ORF480P | |
| 483 | hyroxyethylthiazole kinase | |||
| 537 | cadmium-transporting ATPase | |||
| 538 | S | S.Hpyfe38ORF4705P (97% identity) | S.Hpy51ORF538P | |
| 539 | outer membrane protein HofF | |||
| 1384 | 208 aa hypothetical protein | |||
| 1385 | S | S.Hpy51NORFVP (98% identity) | S.Hpy51ORF1386P | |
| 1386 | M | M.Hpy51NORFVP (100% identity) | M.Hpy51ORF1386P | |
| 1387 | R | Hpy51NORFVP (100% identity) | Hpy51ORF1386P | |
| 1388 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 33 | type III restriction enzyme M protein | |||
| 34 | M | type IIS m4C methylase | GAAGA | M1.Hpy51ORF34P |
| 35 | M | M2.HpyAR8ORF205P (100% identity) | GAAGA | M2.Hpy51ORF34P |
| 36 | R | Hpy51NORFFP (100% identity) | GAAGA | Hpy51ORF34P |
| 37 | response regulator | |||
| 47 | quinolinate phosphoribosyl transferase | |||
| 48 | RM | Hpy51NORFUP (95% identity) | Hpy51ORF48P | |
| 49 | type II m6A methylase | |||
| 48 | Type IIG restriction-modification enzyme | |||
| 49 | M | M.Hpy51NORFIP (100% identity) | GANTC | M.Hpy51ORF49P |
| ??? | R | Hpy51NORFIP (100% identity) | GANTC | Hpy51ORF49P |
| 51 | carboxyl-terminal protease | |||
| 58 | integral membrane protein | |||
| 59 | M | M1.Hpy51NORFBP (100% identity) | CCTC | M1.Hpy51ORF59P |
| 60 | M | M2.HpyOK310ORFLP (100% identity) | CCTC | M2.Hpy51ORF59P |
| 61 | R | Hpy51NORFBP (93% identity) | CCTC | Hpy51ORF59P |
| 62 | adenine methyltransferase | |||
| 61 | 391 aa hypothetical protein | |||
| 62 | M | M.HpySG13XII (100% identity) | GTSAC | M.Hpy51I |
| 63 | R | Hpy51NORFKP (100% identity) | GTSAC | Hpy51I |
| ??? | 78 aa hypothetical protein | |||
| 94 | malonyl coenzyme A-acyl carrier protein | |||
| ??? | R | M.Hpy51NORFRP (50% identity) | GATC | Hpy51ORF96P |
| ??? | M | Hpy51ORF96P (15% identity) | GATC | M.Hpy51ORF96P |
| 97 | pseudogene | |||
| 175 | 5-methylcytosine-specific restriction enzyme B | |||
| 176 | R | Hpy51NORFDP (100% identity) | Hpy51ORF176P | |
| 177 | sialic acid synthase | |||
| 257 | large subunit of the single-stranded | |||
| ??? | M | M.HpyJ017IV (99% identity) | TCGA | M.Hpy51ORF258P |
| 259 | 204 aa hypothetical protein | |||
| 259 | 204 aa hypothetical protein | |||
| 260 | R | Hpy51NORFSP (100% identity) | CCGG | Hpy51ORF261P |
| 261 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpy51ORF261P |
| 262 | ATP-dependent protease binding subunit/heat | |||
| 441 | outer membrane protein HopJ | |||
| 442 | M | M.Hpy51NORFA1P (100% identity) | ATTAAT | M.Hpy51ORF442P |
| 443 | type II restriction endonuclease | |||
| 444 | GTP-binding protein of the TypA subfamily | |||
| 445 | M | M.Hpy51NORFPP (100% identity) | ACNGT | M.Hpy51ORF445P |
| 446 | R | Hpyfe88ORF4775P (100% identity) | ACNGT | Hpy51ORF445P |
| 447 | type II m5C methylase | |||
| 446 | type II restriction endonuclease | |||
| 447 | M | M.Hpy51NORFJP (98% identity) | ACGT | M.Hpy51ORF447P |
| 448 | R | Hpy51NORFJP (80% identity) | ACGT | Hpy51ORF447P |
| 449 | catalase | |||
| 633 | 96 aa hypothetical protein | |||
| 634 | R | Hpyfe33ORF3810P (100% identity) | CCNNGG | Hpy51ORF635P |
| 635 | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.Hpy51ORF635P |
| 636 | 276 aa hypothetical protein | |||
| 652 | outer membrane protein HorF | |||
| ??? | RM | Type IIG restriction-modification enzyme | Hpy51ORF653BP | |
| ??? | RM | 351 aa hypothetical protein | Hpy51ORF653AP | |
| 655 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 812 | outer membrane protein | |||
| 813 | R | Hpy51NORFLP (95% identity) | GTAC | Hpy51ORF814P |
| 814 | M | M.Hpy51NORFLP (99% identity) | GTAC | M.Hpy51ORF814P |
| 815 | DNA gyrase subunit B | |||
| 848 | flagellar hook protein | |||
| 849 | R | Hpy51NORFHP (100% identity) | GTNNAC | Hpy51ORF850P |
| 850 | M | M.Hpy51NORFHP (98% identity) | GTNNAC | M.Hpy51ORF850P |
| 851 | ATP-dependent single-stranded DNA helicase | |||
| 986 | biotin carboxylase | |||
| 987 | M | M.Hpyfe88ORF2055P (100% identity) | TCNNGA | M.Hpy51ORF987P |
| 988 | R | Hpy51NORFNP (100% identity) | TCNNGA | Hpy51ORF987P |
| 989 | 197 aa hypothetical protein | |||
| 1019 | 144 aa hypothetical protein | |||
| 1020 | M | M.HpyK042XV (99% identity) | GCGC | M.Hpy51ORF1020P |
| 1021 | temporal regulator of flagellar apparatus | |||
| 1072 | outer membrane protein HopQ | |||
| 1073 | M | M.Hpy51NORFAP (100% identity) | TCNGA | M.Hpy51ORF1073P |
| 1074 | R | Hpy51NORFAP (100% identity) | TCNGA | Hpy51ORF1073P |
| 1075 | purine-nucleoside phosphorylase | |||
| 1103 | 222 aa hypothetical protein | |||
| 1104 | M | M.Hpy51NORFMP (100% identity) | CATG | M.Hpy51ORF1104P |
| ??? | R | Hpy51NORFMP (100% identity) | CATG | Hpy51ORF1104AP |
| 1107 | serine acetyltransferase | |||
| 1321 | DNA polymerase I | |||
| 1322 | S | S.Hpy51NORFZP (99% identity) | S.Hpy51ORF1323P | |
| 1323 | RM | Hpy51NORFZP (78% identity) | Hpy51ORF1323P | |
| 1324 | 191 aa hypothetical protein | |||
| 1367 | 173 aa hypothetical protein | |||
| ??? | RM | Hpy51NORFTP (100% identity) | Hpy51ORF1368P | |
| 1369 | pseudogene | |||
| 1403 | 68 aa hypothetical protein | |||
| ??? | M | M.Hpy51NORFQP (100% identity) | TGCA | M.Hpy51ORF1404P |
| 1405 | R | HpyK042IIP (100% identity) | TGCA | Hpy51ORF1404P |
| 1406 | cytosine-methyltransferase | |||
| 1405 | 243 aa hypothetical protein | |||
| 1406 | M | M.HpyK117ORF7445P (100% identity) | M.Hpy51ORF1406P | |
| 1407 | translation elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 31 | rod shape-determining protein | |||
| 32 | R | Hpy51NORFWP (100% identity) | Hpy51ORF33P | |
| 33 | M | M.Hpy458ORFMP (78% identity) | M.Hpy51ORF33P | |
| 34 | type IIS m4C methylase | |||
| 1255 | citrate synthase | |||
| 1256 | M | M.Hpy51NORFXP (100% identity) | M.Hpy51ORF1256P | |
| 1257 | R | Hpy51NORFXP (91% identity) | Hpy51ORF1256P | |
| 1258 | biotin synthetase | |||
| 1370 | 356 aa hypothetical protein | |||
| ??? | R | type III restriction endonuclease | Hpy51ORF1374BP | |
| 1371 | IS607 transposase orfA | |||
| 1372 | IS607 transposase orfB | |||
| 1373 | R | Hpy51NORFYP (100% identity) | Hpy51ORF1374AP | |
| 1374 | M | M.HpyAR8ORF7260P (69% identity) | M.Hpy51ORF1374P | |
| 1375 | ATP-dependent DNA helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 174 | translation elongation factor EF-P | |||
| 175 | R | R1.HpyK117ORF945P (100% identity) | Hpy51McrBP | |
| 176 | 404 aa hypothetical protein | |||
| 804 | ribosomal protein L9 | |||
| 805 | R | Hpy51NGmrSDP (100% identity) | Hpy51GmrSDP | |
| 806 | glutamine synthetase | |||