Salmonella enterica subsp. enterica serovar Typhimurium |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium RM systems
Ref: Owen V,S. and Rowe,W. unpublished
REBASE ref # 24628
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,811,399 bp | LT855376 |
| chromosome 1: | 4,985,374 bp | LT795114 |
| plasmid 2: | 93,862 bp | LT855377 |
| plasmid p1: | 246,444 bp | LT795115 |
REBASE acronym: Sen2UK
Org_num: 24465
All begin STMU2UK_, STMU2UK_PSLT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 4495 | endoribonuclease symE | |||
| 4496 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen2UKORF4497P |
| 4497 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen2UKORF4497P |
| 4498 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen2UKORF4497P |
| 4499 | EcoKMrr | |||
| chromosome 1 | ||||
| ??? | methylated adenine and cytosine restriction protein | |||
| ??? | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen5230ORFGP |
| ??? | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen5230ORFGP |
| ??? | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen5230ORFGP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1944 | inner membrane transporter yedA | |||
| 1945 | V | V.StyUK1DcmP (100% identity) | V.Sen2UKDcmP | |
| 1946 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen2UKDcmP |
| 1947 | Uncharacterised protein | |||
| 1990 | Crossover junction endodeoxyribonuclease rusA | |||
| 1991 | M | M.StyUK1V (100% identity) | GATC | M.Sen2UKORF1991P |
| 1992 | PerC transcriptional activator | |||
| 3363 | Hin recombinational enhancer-binding protein | |||
| 3364 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen2UKORF3364P |
| 3365 | Uncharacterised protein | |||
| 3462 | Ribulose-phosphate 3-epimerase | |||
| 3463 | M | M.StyTDamP (100% identity) | GATC | M.Sen2UKDamP |
| 3464 | Uncharacterised protein | |||
| 4464 | cytochrome c biogenesis protein CcmA | |||
| 4465 | RM | StyUK1IV (100% identity) | GATCAG | Sen2UKORF4465P |
| 4466 | Uncharacterised protein | |||
| chromosome 1 | ||||
| ??? | M | M.StyTDamP (100% identity) | GATC | M.Sen5230DamP |
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen5230ORFAP |
| ??? | M | M.SensSZL38ORF19965P (100% identity) | M.Sen5230ORFBP | |
| ??? | M | M.Ssp17155ORFGP (100% identity) | M.Sen5230ORFCP | |
| ??? | M | M.StyTORF1914P (100% identity) | M.Sen5230ORFDP | |
| ??? | M | M.Ssp17155ORFIP (100% identity) | M.Sen5230ORFEP | |
| ??? | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen5230DcmP |
| ??? | V | V.StyUK1DcmP (100% identity) | V.Sen5230DcmP | |
| ??? | RM | StyUK1IV (100% identity) | GATCAG | Sen5230ORFMP |
| plasmid 2 | ||||
| 54 | cytoplasmic protein | |||
| 55 | M | M.StyUK1ORFAP (100% identity) | M.Sen2UKORF55P | |
| 56 | cytoplasmic protein | |||
| plasmid p1 | ||||
| ??? | M | M.YpsF1ORFCP (100% identity) | M.Sen5230ORFHP | |
| ??? | M | M.YpsF1ORFDP (100% identity) | M.Sen5230ORFKP | |
| ??? | 563 aa hypothetical protein | |||
| ??? | M | M.YpsF1ORFBP (100% identity) | M.Sen5230ORFJP | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 359 | Sialic acid permease | |||
| 360 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen2UKORF360P |
| 361 | R | StyUK1IP (99% identity) | CAGAG | Sen2UKORF360P |
| 362 | Uncharacterised protein | |||
| chromosome 1 | ||||
| ??? | R | StyUK1IP (100% identity) | CAGAG | Sen5230ORFFP |
| ??? | M | M.StyUK1I (100% identity) | CAGAG | M.Sen5230ORFFP |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 4498 | Type-1 restriction enzyme R protein | |||
| 4499 | R | StyUK1MrrP (100% identity) | Sen2UKMrrP | |
| 4500 | Uncharacterised protein | |||
| chromosome 1 | ||||
| ??? | R | StyUK1MrrP (100% identity) | Sen5230MrrP | |
| ??? | type I restriction-modification system deoxyribonuclease | |||