Phycisphaerae bacterium SM-Chi-D1 |
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Putative Phycisphaerae bacterium SM-Chi-D1 RM systems
Ref: Spring,S. et al. unpublished
REBASE ref # 23836
Complete sequence: 3,868,357 bp
GenBank #: CP019646
REBASE acronym: PbaD1
Org_num: 22824
All begin SMSP2_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1114 | 241 aa hypothetical protein | |||
| 1115 | R | DmcSG1ORFAP (73% identity) | PbaD1ORF1120P | |
| 1116 | S | S.Smeml20ORF2505P (32% identity) | S1.PbaD1ORF1120P | |
| 1117 | Transposase, IS30 family | |||
| 1118 | Transposase | |||
| 1119 | S | S.NhaLW7ORF16160P (20% identity) | S2.PbaD1ORF1120P | |
| 1120 | M | M.Ssp4073ORF64400P (63% identity) | M.PbaD1ORF1120P | |
| 1121 | site-specific tyrosine recombinase XerC | |||
| 1530 | 173 aa hypothetical protein | |||
| 1531 | M | M.PbaD1ORF2101P (93% identity) | GACNNNNNNNRTGA | M.PbaD1I |
| 1532 | 387 aa hypothetical protein | |||
| 1533 | 160 aa hypothetical protein | |||
| 1534 | 235 aa hypothetical protein | |||
| 1535 | S | S.MlaZI (39% identity) | GACNNNNNNNRTGA | S.PbaD1I |
| 1536 | 399 aa hypothetical protein | |||
| 1537 | 276 aa hypothetical protein | |||
| 1538 | Divergent AAA domain protein | |||
| 1539 | R | UarANMEORFHP (66% identity) | GACNNNNNNNRTGA | PbaD1IP |
| 1540 | 366 aa hypothetical protein | |||
| 2100 | 138 aa hypothetical protein | |||
| 2101 | M | M.PbaD1I (93% identity) | M.PbaD1ORF2101P | |
| 2102 | Virulence protein | |||
| 2231 | 67 aa hypothetical protein | |||
| 2232 | R | MtaRPORF12540P (58% identity) | CCANNNNNNNCTC | PbaD1IIP |
| 2233 | S | S.Cth41ORF10021P (40% identity) | CCANNNNNNNCTC | S.PbaD1II |
| 2234 | 193 aa hypothetical protein | |||
| 2235 | M | M.Hbr392ORF13305BP (37% identity) | CCANNNNNNNCTC | M.PbaD1II |
| 2236 | oxidoreductase YteT precursor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 86 | Virulence protein | |||
| 87 | M | M.EsaSS1214ORFAP (24% identity) | GCATC | M.PbaD1III |
| 88 | R | SbaTM71ORF951P (50% identity) | GCATC | PbaD1IIIP |
| 89 | Modification methylase DpnIIB | |||
| 88 | AlwI restriction endonuclease | |||
| 89 | M | M.UbaWWE31ORF770P (59% identity) | GANTC | M.PbaD1ORF89P |
| 90 | Bifunctional protein BirA | |||
| 734 | Toxin-antitoxin biofilm protein TabA | |||
| 735 | M | M1.TdiTDORF7630P (57% identity) | GGATG | M1.PbaD1VI |
| 736 | M | M2.TdiTDORF7630P (65% identity) | GGATG | M2.PbaD1VI |
| 737 | R | FpsR7ORF360P (30% identity) | GGATG | PbaD1VIAP |
| 738 | Transposase, IS30 family | |||
| 739 | R | FpsR7ORF360P (16% identity) | GGATG | PbaD1VIBP |
| 740 | Asparagine--tRNA ligase | |||
| 1549 | Transposase | |||
| 1550 | M | Modification methylase DpnIIB | CGCG | M.PbaD1ORF1550P |
| 1551 | 132 aa hypothetical protein | |||
| 1783 | 145 aa hypothetical protein | |||
| 1784 | M | M.Pba34ORF13995P (51% identity) | M.PbaD1ORF1784P | |
| 1785 | 187 aa hypothetical protein | |||
| 1931 | 3-methyl-2-oxobutanoate | |||
| 1933 | RM | Mru13258ORF1711P (58% identity) | PbaD1ORF1933P | |
| 1934 | 36 aa hypothetical protein | |||
| 1940 | Apolipoprotein N-acyltransferase | |||
| 1941 | M | M.PbaBD1ORF3313P (43% identity) | M.PbaD1ORF1941P | |
| 1942 | Cytochrome c551/c552 | |||
| 2077 | 266 aa hypothetical protein | |||
| 2078 | RM | PbaD1ORF2106P (64% identity) | PbaD1ORF2078P | |
| 2079 | 319 aa hypothetical protein | |||
| 2105 | 91 aa hypothetical protein | |||
| 2106 | RM | PbaD1ORF2078P (64% identity) | PbaD1ORF2106P | |
| 2107 | cytidylate kinase | |||
| 2151 | Endonuclease V | |||
| 2152 | M | M.Psp1480ORF9130P (54% identity) | CTGCAG | M.PbaD1IV |
| 2153 | R | DhyAM13ORF10290P (64% identity) | CTGCAG | PbaD1IVP |
| 2154 | Uridylate kinase | |||
| 2278 | 84 aa hypothetical protein | |||
| 2279 | RM | Tde3500ORF12570P (41% identity) | PbaD1ORF2279P | |
| 2280 | Modification methylase RsrI | |||
| 2279 | Type I restriction-modification system | |||
| 2280 | M | M.Tde3500ORF12570P (72% identity) | M.PbaD1ORF2280P | |
| 2281 | indolepyruvate oxidoreductase subunit beta | |||
| 2396 | L-rhamnose mutarotase | |||
| 2397 | M | M.Oba9480ORFDP (52% identity) | ATTAAT | M.PbaD1V |
| 2398 | R | AseI (74% identity) | ATTAAT | PbaD1VP |
| 2399 | dTDP-4-dehydrorhamnose reductase | |||
| 2454 | 531 aa hypothetical protein | |||
| 2455 | R | Hfl51ORFIP (70% identity) | PbaD1ORF2456P | |
| 2456 | M | M.Hfl51ORFIP (74% identity) | M.PbaD1ORF2456P | |
| 2457 | Glycosyl hydrolase family 109 protein 1 | |||
| 2479 | methylcobalamin:coenzyme M methyltransferase | |||
| 2480 | C | C.Nsp7524ORF2712P (58% identity) | C.PbaD1ORF2481P | |
| 2481 | M | M.PfuCFX1ORF1367P (36% identity) | M.PbaD1ORF2481P | |
| 2482 | R | PspA349ORFDP (37% identity) | PbaD1ORF2481P | |
| 2483 | V | V.Mspo1ORFJP (49% identity) | V.PbaD1ORF2481P | |
| 2484 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2219 | Peptidyl-tRNA hydrolase YaeJ | |||
| 2220 | M | M.DspN47ORF130P (67% identity) | M.PbaD1ORF2220P | |
| 2221 | R | DspN47ORF130P (81% identity) | PbaD1ORF2220P | |
| 2222 | 855 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 279 | 48 aa hypothetical protein | |||
| 280 | R | LspCC1McrB2P (20% identity) | PbaD1McrBP | |
| 281 | R | PbaD4McrCP (52% identity) | PbaD1McrCP | |
| 282 | Deoxyguanosinetriphosphate triphosphohydrolase | |||