Helicobacter pylori MKM5 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori MKM5 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,606,460 bp
GenBank #: AP017360
REBASE acronym: HpyMKM5
Org_num: 22629
All begin HPMKM5_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 444 | polyphosphate kinase | |||
| 445 | S | S.HpyMKF3ORF492P (99% identity) | S.HpyMKM5ORF446P | |
| 446 | M | M.HpyF228ORFKP (96% identity) | M.HpyMKM5ORF446P | |
| 447 | integrase/recombinase | |||
| 472 | DNA methylase | |||
| ??? | R | Hpyfe71ORF4995P (89% identity) | HpyMKM5ORF473P | |
| 476 | uncharacterized protein | |||
| 528 | integral membrane protein | |||
| 529 | M | M.HpyP82ORFGP (84% identity) | M.HpyMKM5ORF529P | |
| 530 | S | S.HpyMKM1ORF853P (43% identity) | S1.HpyMKM5ORF529P | |
| 531 | S | S2.HpyMKM5ORF590P (96% identity) | S2.HpyMKM5ORF529P | |
| 532 | R | HpyF211ORF519P (98% identity) | HpyMKM5ORF529P | |
| 533 | hydroxyethylthiazole kinase | |||
| 589 | cadmium-transporting ATPase, P-type | |||
| 590 | S | S.HpyF219ORFHP (41% identity) | S1.HpyMKM5ORF590P | |
| 591 | S | S1.HpyMKM1ORF792P (98% identity) | S2.HpyMKM5ORF590P | |
| 592 | outer membrane protein HofF | |||
| 1459 | cagY like protein | |||
| 1460 | S | S.HpyCHN7V (91% identity) | S.HpyMKM5ORF1462P | |
| 1461 | uncharacterized protein | |||
| 1462 | M | M.HpyJF13ORF1463P (98% identity) | M.HpyMKM5ORF1462P | |
| 1463 | R | Hpy90ORF1463P (98% identity) | HpyMKM5ORF1462P | |
| 1464 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| 47 | RM | HpyF93ORFHP (92% identity) | HpyMKM5ORF47P | |
| 48 | adenine-specific DNA methyltransferase | |||
| 47 | adenine specific DNA methyltransferase | |||
| 48 | M | M.Hpyfe99ORF7240P (99% identity) | GANTC | M.HpyMKM5ORF48P |
| 49 | R | HpyOK06ORFKP (96% identity) | GANTC | HpyMKM5ORF48P |
| 50 | protease | |||
| 57 | terC family integral membrane protein | |||
| 58 | M | M1.HpyF235ORFFP (100% identity) | CCTC | M1.HpyMKM5ORF58P |
| 59 | M | M2.HpySG17IIIP (78% identity) | CCTC | M2.HpyMKM5ORF58P |
| 60 | sodium/proline symporter | |||
| 105 | 53 aa hypothetical protein | |||
| 106 | R | Hpy17ORF1108P (98% identity) | GATC | HpyMKM5ORF107P |
| 107 | M | M.HpyF235ORFGP (99% identity) | GATC | M.HpyMKM5ORF107P |
| 108 | alpha-1,2-fucosyltransferase | |||
| 271 | exodeoxyribonuclease VII large subunit | |||
| 272 | R | HpyJSHR31ORF11290P (97% identity) | CCGG | HpyMKM5ORF273P |
| 273 | M | M.HpyF235ORFAP (100% identity) | CCGG | M.HpyMKM5ORF273P |
| 274 | ATP-dependent protease binding subunit | |||
| 321 | polysaccharide deacetylase family protein | |||
| 322 | R | HpyTW25XIIP (54% identity) | HpyMKM5ORF323P | |
| ??? | M | M.HpyF235ORFIP (99% identity) | M.HpyMKM5ORF323P | |
| 325 | uncharacterized protein | |||
| 490 | outer membrane protein | |||
| 491 | M | M.HpyF235ORFKP (99% identity) | ATTAAT | M.HpyMKM5ORF491P |
| 492 | DD-heptosyltransferase | |||
| 493 | GTP-binding protein TypA | |||
| 494 | M | M.HpyF235ORFCP (100% identity) | ACNGT | M.HpyMKM5ORF494P |
| 495 | R | HpyF235ORFCP (100% identity) | ACNGT | HpyMKM5ORF494P |
| 496 | DNA cytosine methyltransferase | |||
| 495 | type II restriction endonuclease | |||
| 496 | M | M.Hpyfe35ORF4900P (98% identity) | ACGT | M.HpyMKM5ORF496P |
| 497 | R | HpyF235ORFDP (100% identity) | ACGT | HpyMKM5ORF496P |
| 498 | catalase-like protein | |||
| 698 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyK116ORF3520P (89% identity) | HpyMKM5ORF699P | |
| 703 | outer membrane protein HorF | |||
| 722 | polysaccharide biosynthesis protein | |||
| 723 | M | M.HpyF235ORFOP (100% identity) | CCNNGG | M.HpyMKM5ORF723P |
| 724 | R | HpyF235ORFOP (100% identity) | CCNNGG | HpyMKM5ORF723P |
| 725 | polysaccharide biosynthesis protein | |||
| 879 | m23/M37 family peptidase | |||
| 880 | R | HpyF75ORF880P (99% identity) | GTAC | HpyMKM5ORF881P |
| 881 | M | M.HpyF235ORFPP (100% identity) | GTAC | M.HpyMKM5ORF881P |
| 882 | DNA gyrase subunit B | |||
| 920 | flagellar hook protein FlgE | |||
| 921 | R | HpyF235ORFQP (100% identity) | GTNNAC | HpyMKM5ORF922P |
| 922 | M | M.HpyF228ORF9880P (98% identity) | GTNNAC | M.HpyMKM5ORF922P |
| 923 | rep helicase, single-stranded DNA-dependent | |||
| 1054 | biotin carboxylase | |||
| 1055 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.HpyMKM5ORF1055P |
| 1056 | R | HpyK117XIIP (100% identity) | TCNNGA | HpyMKM5ORF1055P |
| 1057 | laminin subunit alpha-2 precursor | |||
| 1089 | uncharacterized protein | |||
| 1090 | M | M.Hpy90ORF1096P (100% identity) | GCGC | M.HpyMKM5ORF1090P |
| 1091 | flgM protein | |||
| 1172 | haloacid dehalogenase-like hydrolase | |||
| 1173 | M | M.HpyF235ORFTP (93% identity) | CATG | M.HpyMKM5ORF1173P |
| 1174 | serine acetyltransferase | |||
| 1337 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1338 | R | HpyF235ORFVP (100% identity) | CGCG | HpyMKM5ORF1339P |
| 1339 | M | M.HpyF235ORFVP (100% identity) | CGCG | M.HpyMKM5ORF1339P |
| 1340 | uncharacterized protein | |||
| 1393 | DNA polymerase I | |||
| 1394 | S | S.HpyJ029ORF6945P (88% identity) | S.HpyMKM5ORF1395P | |
| 1395 | M | M.Hpyfe114ORF270P (99% identity) | M.HpyMKM5ORF1395P | |
| 1396 | R | Hpyfe110ORF290P (99% identity) | HpyMKM5ORF1395P | |
| 1397 | restriction enzyme BcgI alpha chain-like | |||
| 1443 | uncharacterized protein | |||
| 1444 | RM | HpyJ019XIII (93% identity) | HpyMKM5ORF1444P | |
| 1445 | uncharacterized protein | |||
| 1480 | uncharacterized protein | |||
| 1481 | M | M.HpyTW16IV (99% identity) | TGCA | M.HpyMKM5ORF1481P |
| 1482 | R | HpyK053XIIIP (99% identity) | TGCA | HpyMKM5ORF1481P |
| 1483 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 33 | rod shape-determining protein MreC | |||
| 34 | R | HpyF235ORFEP (99% identity) | HpyMKM5ORF35P | |
| 35 | M | M.HpyMKF10ORF77P (99% identity) | M.HpyMKM5ORF35P | |
| 36 | transcriptional regulator | |||
| 1322 | endonuclease | |||
| 1323 | M | M.HpyGU83AORFWP (98% identity) | M.HpyMKM5ORF1323P | |
| 1324 | R | HpyF235ORFUP (91% identity) | HpyMKM5ORF1323P | |
| 1325 | biotin synthase | |||
| 1445 | uncharacterized protein | |||
| 1446 | R | HpyF235ORFYP (99% identity) | HpyMKM5ORF1447P | |
| ??? | M | M.Hpyfe3ORF40P (97% identity) | M.HpyMKM5ORF1447P | |
| 1449 | ATP-dependent DNA helicase RecG | |||