Helicobacter pylori MKM1 |
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Putative Helicobacter pylori MKM1 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,567,867 bp
GenBank #: AP017359
REBASE acronym: HpyMKM1
Org_num: 22628
All begin HPMKM1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 462 | polyphosphate kinase | |||
| 463 | S | S.HpyJA111ORF2305P (100% identity) | S.HpyMKM1ORF464P | |
| ??? | M | M.HpyJA111ORF2305P (100% identity) | M.HpyMKM1ORF464P | |
| ??? | R | HpyF18KORF469P (95% identity) | HpyMKM1ORF464P | |
| 469 | uncharacterized protein | |||
| 791 | type I restriction enzyme R protein | |||
| 792 | S | S.HpyJA111ORF3905P (48% identity) | S1.HpyMKM1ORF792P | |
| 793 | S | S.HpyJA111ORF3905P (88% identity) | S2.HpyMKM1ORF792P | |
| 794 | cadmium-transporting ATPase, P-type | |||
| 850 | hydroxyethylthiazole kinase | |||
| 851 | R | HpyJA111XIP (100% identity) | HpyMKM1ORF853P | |
| 852 | S | S.HpyJA111XI (89% identity) | S.HpyMKM1ORF853P | |
| 853 | M | M.HpyJA111XI (100% identity) | M.HpyMKM1ORF853P | |
| 854 | integral membrane protein | |||
| 1338 | histidine and glutamine-rich protein | |||
| 1339 | S | S.HpyT028XVII (37% identity) | S1.HpyMKM1ORF1339P | |
| ??? | S | S.HpyJA111ORF6700P (99% identity) | S2.HpyMKM1ORF1339P | |
| 1341 | formyltetrahydrofolate hydrolase | |||
| 1440 | FAD-dependent thymidylate synthase | |||
| 1441 | S | S.Hpy5ORF15590P (97% identity) | S.HpyMKM1ORF1442P | |
| ??? | M | M.HpyJA111ORF7205P (100% identity) | M.HpyMKM1ORF1442P | |
| ??? | R | HpyJA111ORF7205P (99% identity) | HpyMKM1ORF1442P | |
| 1447 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyJA111ORF265P (97% identity) | HpyMKM1ORF46P | |
| 48 | protease | |||
| 55 | terC family integral membrane protein | |||
| 56 | M | M1.HpyJA111ORF325P (100% identity) | CCTC | M1.HpyMKM1ORF56P |
| 57 | M | M2.HpyJA111ORF325P (94% identity) | CCTC | M2.HpyMKM1ORF56P |
| 58 | sodium/proline symporter | |||
| 139 | alpha-1,2-fucosyltransferase | |||
| 140 | M | M.HpyJA111VI (100% identity) | GATC | M.HpyMKM1ORF140P |
| 141 | R | HpyJA111VIP (100% identity) | GATC | HpyMKM1ORF140P |
| 142 | malonyl coenzyme A-acyl carrier protein | |||
| 198 | type IV restriction-modification enzyme | |||
| 199 | R | R2.HpyJA111ORF985P (96% identity) | HpyMKM1ORF199P | |
| 200 | sialic acid synthase | |||
| 285 | exodeoxyribonuclease VII large subunit | |||
| 286 | R | HpyJA111ORF1430P (100% identity) | CCGG | HpyMKM1ORF287P |
| 287 | M | M.HpyJA111ORF1430P (100% identity) | CCGG | M.HpyMKM1ORF287P |
| 288 | ATP-dependent protease binding subunit | |||
| 337 | polysaccharide deacetylase family protein | |||
| 338 | R | HpyJA111ORF1680P (100% identity) | CTNAG | HpyMKM1ORF339P |
| ??? | M | M.HpyJA111ORF1680P (100% identity) | CTNAG | M.HpyMKM1ORF339P |
| 341 | uncharacterized protein | |||
| 483 | outer membrane protein | |||
| 484 | M | M.HpyJA111III (100% identity) | ATTAAT | M.HpyMKM1ORF484P |
| 485 | type II adenine specific methyltransferase | |||
| 486 | GTP-binding protein TypA | |||
| 487 | M | M.HpyJSHR6ORF9370P (100% identity) | ACNGT | M.HpyMKM1ORF487P |
| 488 | R | Hpyfe93ORF4895P (100% identity) | ACNGT | HpyMKM1ORF487P |
| 489 | DNA cytosine methyltransferase | |||
| 488 | type II restriction endonuclease | |||
| 489 | M | M.HpyJA111ORF2415P (86% identity) | ACGT | M.HpyMKM1ORF489P |
| ??? | R | HpyJA111ORF2415P (100% identity) | ACGT | HpyMKM1ORF489P |
| 492 | catalase-like protein | |||
| 509 | DNA gyrase subunit B | |||
| 510 | M | M.Hpy1136ORFUP (99% identity) | GTAC | M.HpyMKM1ORF510P |
| 511 | R | HpyJA111VIIP (100% identity) | GTAC | HpyMKM1ORF510P |
| 512 | outer membrane protein | |||
| 665 | polysaccharide biosynthesis protein | |||
| 666 | R | HpyJA111VP (100% identity) | CCNNGG | HpyMKM1ORF667P |
| ??? | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.HpyMKM1ORF667P |
| 668 | polysaccharide biosynthesis protein | |||
| 683 | outer membrane protein | |||
| ??? | RM | HpyJA111ORF3385P (100% identity) | HpyMKM1ORF684P | |
| 686 | glycerol-3-phosphate dehydrogenase | |||
| 903 | flagellar hook protein FlgE | |||
| 904 | R | HpyJA111VIIIP (100% identity) | GTNNAC | HpyMKM1ORF905P |
| 905 | M | M.HpyJA111VIII (98% identity) | GTNNAC | M.HpyMKM1ORF905P |
| 906 | rep helicase, single-stranded DNA-dependent | |||
| 1036 | biotin carboxylase | |||
| 1037 | M | M.Hpyfe12ORF2065P (100% identity) | TCNNGA | M.HpyMKM1ORF1037P |
| 1038 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | HpyMKM1ORF1037P |
| 1039 | laminin subunit alpha-2 precursor | |||
| 1070 | uncharacterized protein | |||
| 1071 | M | M.HpyJA111XIII (98% identity) | GCGC | M.HpyMKM1ORF1071P |
| 1072 | flgM protein | |||
| 1157 | haloacid dehalogenase | |||
| 1158 | M | M.HpyJA111I (100% identity) | CATG | M.HpyMKM1ORF1158P |
| 1159 | ulcer-associated gene restriction endonuclease | |||
| 1160 | R | R1.HpyTN2ORF1370P (92% identity) | HpyMKM1ORF1158P | |
| 1161 | serine O-acetyltransferase | |||
| 1322 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1323 | R | HpyJA111ORF6630P (100% identity) | CGCG | HpyMKM1ORF1324P |
| 1324 | M | M.HpyJF13ORF1350P (100% identity) | CGCG | M.HpyMKM1ORF1324P |
| 1325 | uncharacterized protein | |||
| 1378 | DNA polymerase I | |||
| 1379 | S | S.HpyJA111XII (45% identity) | S1.HpyMKM1ORF1380P | |
| 1380 | S | S.HpyJA111XII (50% identity) | S2.HpyMKM1ORF1380P | |
| 1381 | RM | HpyJA111XII (100% identity) | HpyMKM1ORF1380P | |
| 1382 | hP1473-transformation associated protein | |||
| 1408 | permease; membrane protein | |||
| 1409 | M | M1.HpyU123V (100% identity) | CCATC | M1.HpyMKM1ORF1409P |
| 1410 | M | M2.HpyJA111IV (100% identity) | CCATC | M2.HpyMKM1ORF1409P |
| 1411 | R | HpyJA111IVP (100% identity) | CCATC | HpyMKM1ORF1409P |
| 1412 | outer membrane protein HorK | |||
| 1425 | transcription elongation factor NusA | |||
| 1426 | RM | HpyJA111ORF7125P (100% identity) | HpyMKM1ORF1426P | |
| 1427 | type III restriction enzyme R protein | |||
| 1463 | uncharacterized protein | |||
| 1464 | M | M.HpyJA111X (100% identity) | TGCA | M.HpyMKM1ORF1464P |
| 1465 | R | HpyJA111XP (100% identity) | TGCA | HpyMKM1ORF1464P |
| 1466 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | R | HpyJA111ORF200P (100% identity) | HpyMKM1ORF34P | |
| 34 | M | M.HpyJA111ORF200P (99% identity) | M.HpyMKM1ORF34P | |
| 35 | transcriptional regulator | |||
| 1308 | endonuclease | |||
| 1309 | M | M.HpyJA111ORF6550P (100% identity) | M.HpyMKM1ORF1309P | |
| 1310 | R | HpyJA111ORF6550P (93% identity) | HpyMKM1ORF1309P | |
| 1311 | biotin synthase | |||
| 1426 | type IIG restriction-modification enzyme | |||
| 1427 | R | HpyJA111ORF7135P (100% identity) | HpyMKM1ORF1428P | |
| ??? | M | M.HpyJA111ORF7135P (100% identity) | M.HpyMKM1ORF1428P | |
| 1430 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 197 | uncharacterized protein | |||
| 198 | R | R1.HpyJA111ORF985P (99% identity) | HpyMKM1McrBP | |
| 199 | type II restriction enzyme | |||