Helicobacter pylori MKF3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori MKF3 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,602,776 bp
GenBank #: AP017357
REBASE acronym: HpyMKF3
Org_num: 22626
All begin HPMKF3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | polyphosphate kinase | |||
| 491 | S | S.HpyF233ORFNP (100% identity) | S.HpyMKF3ORF492P | |
| 492 | M | M.Hpy35ORF20683P (98% identity) | M.HpyMKF3ORF492P | |
| ??? | R | HpyK034ORF2230P (93% identity) | HpyMKF3ORF492P | |
| 495 | uncharacterized protein | |||
| 813 | hof-family outer membrane protein | |||
| 814 | S | S.HpyMKF3ORF874P (100% identity) | S.HpyMKF3ORF814P | |
| 815 | cadmium-transporting ATPase, P-type | |||
| 871 | hydroxyethylthiazole kinase | |||
| 872 | R | HpyF210ORF535P (85% identity) | HpyMKF3ORF874P | |
| 873 | S | S.HpyMKF3ORF814P (100% identity) | S.HpyMKF3ORF874P | |
| 874 | M | M.HpyMKM5ORF529P (97% identity) | M.HpyMKF3ORF874P | |
| 875 | integral membrane protein | |||
| 1458 | FAD-dependent thymidylate synthase | |||
| 1459 | S | S.HpySG02ORF7195P (58% identity) | S.HpyMKF3ORF1462P | |
| 1460 | 63 aa hypothetical protein | |||
| 1461 | uncharacterized protein | |||
| ??? | M | M.HpyOK302ORFHP (93% identity) | M.HpyMKF3ORF1462P | |
| 1464 | R | Hpy9810ORF4P (98% identity) | HpyMKF3ORF1462P | |
| 1465 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyK041ORF260P (89% identity) | HpyMKF3ORF45P | |
| 45 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| ??? | M | M.HpyJ017VI (99% identity) | M.HpyMKF3ORF47P | |
| ??? | R | HpyOK34ORFNP (97% identity) | HpyMKF3ORF47P | |
| 51 | adenine specific DNA methyltransferase | |||
| 59 | terC family integral membrane protein | |||
| 60 | M | M2.Hpyfe114ORF6815P (99% identity) | CCTC | M1.HpyMKF3ORF60P |
| 61 | M | M1.Hpyfe78ORF6990P (65% identity) | M2.HpyMKF3ORF60P | |
| 62 | sodium/proline symporter | |||
| 142 | alpha-1,2-fucosyltransferase | |||
| 143 | M | M.Hpy1681ORFTP (98% identity) | GATC | M.HpyMKF3ORF143P |
| 144 | R | HpyT017ORF465P (87% identity) | GATC | HpyMKF3ORF143P |
| 145 | tetratricopeptide TPR_2 repeat protein | |||
| 315 | exodeoxyribonuclease VII large subunit | |||
| 316 | R | Hpy23ORF960P (98% identity) | CCGG | HpyMKF3ORF317P |
| 317 | M | M.HpyP90ORFAP (100% identity) | CCGG | M.HpyMKF3ORF317P |
| 318 | ATP-dependent protease binding subunit | |||
| 366 | polysaccharide deacetylase family protein | |||
| 367 | R | Hpy83ORF369P (99% identity) | CTNAG | HpyMKF3ORF368P |
| 368 | M | M.HpyF93ORFNP (100% identity) | CTNAG | M.HpyMKF3ORF368P |
| 369 | uncharacterized protein | |||
| 508 | outer membrane protein | |||
| 509 | M | M.Hpyfe70ORF4910P (99% identity) | ATTAAT | M1.HpyMKF3ORF509P |
| 510 | type II adenine specific methyltransferase | |||
| 511 | GTP-binding protein TypA | |||
| ??? | M | M.Hpy23ORF767P (99% identity) | ACNGT | M2.HpyMKF3ORF509P |
| 514 | type II restriction endonuclease | |||
| ??? | hypothetical protein | |||
| 514 | R | Hpy23ORF767P (100% identity) | ACNGT | HpyMKF3ORF514P |
| 515 | DNA cytosine methyltransferase | |||
| 514 | type II restriction endonuclease | |||
| 515 | M | M.Hpy23ORF765P (100% identity) | ACGT | M.HpyMKF3ORF515P |
| 516 | R | Hpyfe74ORF4920P (80% identity) | ACGT | HpyMKF3ORF515P |
| 517 | catalase-like protein | |||
| 533 | DNA gyrase subunit B | |||
| 534 | M | M.HpyF94ORF748P (99% identity) | GTAC | M.HpyMKF3ORF534P |
| 535 | R | HpyPF16IXP (100% identity) | GTAC | HpyMKF3ORF534P |
| 536 | outer membrane protein | |||
| 693 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyFORF676P (75% identity) | HpyMKF3ORF694P | |
| 697 | uncharacterized protein | |||
| 712 | polysaccharide biosynthesis protein | |||
| 713 | M | M.HpyJA107ORF3495P (100% identity) | GGNNCC | M.HpyMKF3ORF713P |
| 714 | R | HpyJA107ORF3495P (100% identity) | GGNNCC | HpyMKF3ORF713P |
| 715 | polysaccharide biosynthesis protein | |||
| 923 | flagellar hook protein FlgE | |||
| 924 | R | Hpy30IXP (100% identity) | GTNNAC | HpyMKF3ORF925P |
| 925 | M | M.Hpy30IX (98% identity) | GTNNAC | M.HpyMKF3ORF925P |
| 926 | rep helicase, single-stranded DNA-dependent | |||
| 1053 | biotin carboxylase | |||
| 1054 | M | M.HpyGU62AORFYP (100% identity) | TCNNGA | M.HpyMKF3ORF1054P |
| 1055 | R | HpyPF57XIIP (100% identity) | TCNNGA | HpyMKF3ORF1054P |
| 1056 | laminin subunit alpha-2 precursor | |||
| 1085 | uncharacterized protein | |||
| 1086 | M | M.Hpy1838CORF2930P (99% identity) | GCGC | M.HpyMKF3ORF1086P |
| 1087 | negative regulator of flagellin synthesis FlgM | |||
| 1170 | haloacid dehalogenase-like hydrolase | |||
| 1171 | M | M.Hpy5ORF12550P (99% identity) | CATG | M.HpyMKF3ORF1171P |
| ??? | R | Hpy5ORF12550P (55% identity) | CATG | HpyMKF3ORF1171P |
| 1174 | serine O-acetyltransferase | |||
| 1340 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1341 | R | Hpy17ORF1316P (99% identity) | CGCG | HpyMKF3ORF1342P |
| 1342 | M | M.HpyF225ORFB1P (99% identity) | CGCG | M.HpyMKF3ORF1342P |
| 1343 | uncharacterized protein | |||
| 1397 | DNA polymerase I | |||
| 1398 | S | S.HpyJ028ORF7055P (96% identity) | S.HpyMKF3ORF1399P | |
| 1399 | RM | HpyP76ORFIP (98% identity) | HpyMKF3ORF1399P | |
| 1400 | hP1473-transformation associated protein | |||
| 1426 | permease; membrane protein | |||
| 1427 | M | M2.Hpyfe71ORF135P (99% identity) | CCATC | M1.HpyMKF3ORF1427P |
| 1428 | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyMKF3ORF1427P |
| ??? | R | HpyJ016IVP (97% identity) | CCATC | HpyMKF3ORF1427P |
| 1431 | outer membrane protein HorK | |||
| 1444 | transcription elongation factor NusA | |||
| 1445 | RM | HpyF209ORF1425P (91% identity) | HpyMKF3ORF1445P | |
| 1446 | type III restriction enzyme R protein | |||
| 1484 | uncharacterized protein | |||
| 1485 | M | M.HpyTW01III (99% identity) | TGCA | M.HpyMKF3ORF1485P |
| 1486 | R | Hpyfe81ORF7425P (98% identity) | TGCA | HpyMKF3ORF1485P |
| 1487 | 63 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1328 | endonuclease | |||
| 1329 | M | M.HpyOK302ORFCP (98% identity) | M.HpyMKF3ORF1329P | |
| 1330 | R | Hpyfe49ORF625P (91% identity) | HpyMKF3ORF1329P | |
| 1331 | biotin synthase | |||
| 1445 | type IIS restriction enzyme R and M protein | |||
| 1446 | R | HpyF233ORFBP (98% identity) | HpyMKF3ORF1447P | |
| 1447 | M | M.HpyJSHR6ORF70P (95% identity) | M.HpyMKF3ORF1447P | |
| 1448 | ATP-dependent DNA helicase RecG | |||