Helicobacter pylori F94 |
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Putative Helicobacter pylori F94 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,566,172 bp
GenBank #: AP017355
REBASE acronym: HpyF94
Org_num: 22624
All begin HPF94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 399 | modification methylase HaeIII | |||
| 400 | M | M.HpyP82ORFGP (84% identity) | M.HpyF94ORF400P | |
| 401 | S | S.HpyF94ORF461P (100% identity) | S.HpyF94ORF400P | |
| 402 | R | HpyF225ORFTP (97% identity) | HpyF94ORF400P | |
| 403 | hydroxyethylthiazole kinase | |||
| 460 | cadmium-transporting ATPase, P-type | |||
| 461 | S | S.HpyF94ORF400P (100% identity) | S.HpyF94ORF461P | |
| 462 | hof-family outer membrane protein | |||
| 790 | uncharacterized protein | |||
| ??? | R | HpyK26ORF2295P (94% identity) | HpyF94ORF793P | |
| 793 | M | M.Hpyfe72ORF4875P (97% identity) | M.HpyF94ORF793P | |
| 794 | S | S.HpyT030ORF2250P (98% identity) | S.HpyF94ORF793P | |
| 795 | polyphosphate kinase | |||
| 1430 | FAD-dependent thymidylate synthase | |||
| 1431 | S | S.Hpy23ORF1426P (100% identity) | S.HpyF94ORF1433P | |
| 1432 | uncharacterized protein | |||
| ??? | M | M.Hpy23ORF1426P (93% identity) | M.HpyF94ORF1433P | |
| ??? | R | HpyV004ORF7200P (94% identity) | HpyF94ORF1433P | |
| 1438 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | nicotinate-nucleotide pyrophosphorylase | |||
| 45 | RM | Hpyfe68ORF6820P (90% identity) | HpyF94ORF45P | |
| 46 | adenine-specific DNA methyltransferase | |||
| 45 | adenine specific DNA methyltransferase | |||
| 46 | M | M.HpyJ019VI (100% identity) | GANTC | M.HpyF94ORF46P |
| 47 | R | HpyOK304ORFMP (97% identity) | GANTC | HpyF94ORF46P |
| 48 | protease | |||
| 55 | terC family integral membrane protein | |||
| 56 | M | M1.HpyF233ORFFP (89% identity) | M1.HpyF94ORF56P | |
| ??? | M | M2.HpyMKM6ORF60P (98% identity) | M2.HpyF94ORF56P | |
| 59 | sodium/proline symporter | |||
| 181 | negative regulator of flagellin synthesis FlgM | |||
| 182 | M | M.HpyNP07XV (99% identity) | GCGC | M.HpyF94ORF182P |
| 183 | uncharacterized protein | |||
| 213 | laminin subunit alpha-2 precursor | |||
| 214 | R | HpySG04XIIP (87% identity) | TCNNGA | HpyF94ORF215P |
| 215 | M | M.Hpy23ORF222P (99% identity) | TCNNGA | M.HpyF94ORF215P |
| 216 | biotin carboxylase | |||
| 345 | rep helicase, single-stranded DNA-dependent | |||
| 346 | M | M.HpyC018XII (98% identity) | GTNNAC | M.HpyF94ORF346P |
| 347 | R | Hpyfe97ORF2880P (97% identity) | GTNNAC | HpyF94ORF346P |
| 348 | flagellar hook protein FlgE | |||
| 397 | phosphatidic acid phosphatase | |||
| 398 | R | Hpy23ORF731P (99% identity) | GGCC | HpyF94ORF399P |
| 399 | M | M.HpyTN2ORF5580P (100% identity) | GGCC | M.HpyF94ORF399P |
| 400 | type I restriction-modification system, M | |||
| 570 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | Hpyfe63ORF3825P (86% identity) | HpyF94ORF571P | |
| 573 | uncharacterized protein | |||
| 590 | polysaccharide biosynthesis protein | |||
| 591 | M | M.HpyMKF3ORF713P (100% identity) | GGNNCC | M.HpyF94ORF591P |
| 592 | R | HpyMKF3ORF713P (100% identity) | GGNNCC | HpyF94ORF591P |
| 593 | polysaccharide biosynthesis protein | |||
| 745 | m23/M37 family peptidase | |||
| ??? | R | Hpy23ORF392P (100% identity) | GTAC | HpyF94ORF748P |
| 748 | M | M.HpyMKF3ORF534P (99% identity) | GTAC | M.HpyF94ORF748P |
| 749 | DNA gyrase subunit B | |||
| 765 | catalase-like protein | |||
| ??? | R | HpyP88ORFWP (98% identity) | ACGT | HpyF94ORF768P |
| 768 | M | M.Hpy1829AORF4970P (99% identity) | ACGT | M.HpyF94ORF768P |
| 769 | type II restriction endonuclease | |||
| 768 | DNA cytosine methyltransferase | |||
| 769 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | HpyF94ORF770P |
| ??? | M | M.HpyNP10ORF4395P (95% identity) | M.HpyF94ORF770P | |
| 772 | GTP-binding protein TypA | |||
| 773 | type II adenine specific methyltransferase | |||
| 774 | M | M.HpyMA23IV (99% identity) | ATTAAT | M.HpyF94ORF774P |
| 775 | outer membrane protein | |||
| 915 | uncharacterized protein | |||
| 916 | M | M.HpyP30ORFOP (100% identity) | CTNAG | M.HpyF94ORF916P |
| 917 | R | HpyPF16VIP (100% identity) | CTNAG | HpyF94ORF916P |
| 918 | polysaccharide deacetylase family protein | |||
| 967 | ATP-dependent protease binding subunit | |||
| 968 | M | M.Hpyfe95ORF1830P (98% identity) | CCGG | M.HpyF94ORF968P |
| 969 | R | Hpy24ORF291P (99% identity) | CCGG | HpyF94ORF968P |
| 970 | type III adenine methyltransferase | |||
| 971 | uncharacterized protein | |||
| 972 | M | M.HpyPF16XI (100% identity) | TCGA | M.HpyF94ORF972P |
| 973 | exodeoxyribonuclease VII large subunit | |||
| 1109 | hrgA protein | |||
| 1110 | M | M.HpyOK313ORFCP (98% identity) | M.HpyF94ORF1110P | |
| 1111 | alpha-1,2-fucosyltransferase | |||
| 1152 | haloacid dehalogenase | |||
| 1153 | M | M.HpyF221ORFRP (92% identity) | CATG | M.HpyF94ORF1153P |
| 1154 | iceA2 protein | |||
| 1372 | DNA polymerase I | |||
| 1373 | S | S.HpyK032ORF455P (67% identity) | S.HpyF94ORF1374P | |
| 1374 | RM | Hpy1829AORF13940P (99% identity) | HpyF94ORF1374P | |
| 1375 | transformation associated protein | |||
| 1415 | transcription elongation factor NusA | |||
| 1416 | RM | HpyJF13ORF1446P (92% identity) | HpyF94ORF1416P | |
| 1417 | type III restriction enzyme R protein | |||
| 1455 | uncharacterized protein | |||
| 1456 | M | M.HpyM6CORFCP (98% identity) | TGCA | M.HpyF94ORF1456P |
| ??? | R | HpyOK303ORFIP (99% identity) | TGCA | HpyF94ORF1456P |
| 1459 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| ??? | M | M.HpyOK88ORFIP (99% identity) | M.HpyF94ORF1459P | |
| 1461 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1305 | endonuclease | |||
| 1306 | M | M.HpySORF7155P (96% identity) | M.HpyF94ORF1306P | |
| 1307 | R | Hpy23ORF1296P (97% identity) | HpyF94ORF1306P | |
| 1308 | biotin synthase | |||
| 1416 | type IIG restriction-modification enzyme | |||
| 1417 | R | HpyAs009ORF7335P (94% identity) | HpyF94ORF1418P | |
| ??? | M | M.Hpyfe22ORF40P (95% identity) | M.HpyF94ORF1418P | |
| 1420 | ATP-dependent DNA helicase RecG | |||