Helicobacter pylori F90 |
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Putative Helicobacter pylori F90 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,588,119 bp
GenBank #: AP017354
REBASE acronym: Hpy90
Org_num: 22623
All begin HPF90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 469 | polyphosphate kinase | |||
| 470 | S | S.Hpyfe104ORF3000P (98% identity) | S.Hpy90ORF471P | |
| ??? | M | M.Hpy67ORF468P (98% identity) | M.Hpy90ORF471P | |
| 473 | R | HpyK036XIIP (93% identity) | Hpy90ORF471P | |
| 474 | uncharacterized protein | |||
| 809 | outer membrane protein HofF | |||
| 810 | S | S.HpyBG9ORF3495P (89% identity) | S.Hpy90ORF810P | |
| 811 | cadmium-transporting ATPase, P-type | |||
| 869 | hydroxyethylthiazole kinase | |||
| 870 | R | HpyF211ORF519P (86% identity) | Hpy90ORF872P | |
| 871 | S | S.HpyCA16ORF5415P (98% identity) | S.Hpy90ORF872P | |
| ??? | M | M.HpyF211ORF519P (98% identity) | M.Hpy90ORF872P | |
| 874 | type I restriction-modification system | |||
| 1460 | FAD-dependent thymidylate synthase | |||
| 1461 | S | S.HpyJA105ORF1425P (91% identity) | S.Hpy90ORF1463P | |
| 1462 | uncharacterized protein | |||
| 1463 | M | M.HpyF211ORF1443P (98% identity) | M.Hpy90ORF1463P | |
| 1464 | R | HpyMKM5ORF1462P (98% identity) | Hpy90ORF1463P | |
| 1465 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 47 | nicotinate-nucleotide pyrophosphorylase | |||
| 48 | RM | HpyCO5ORF6490P (77% identity) | Hpy90ORF48P | |
| 49 | adenine-specific DNA methyltransferase | |||
| 48 | adenine specific DNA methyltransferase | |||
| 49 | M | adenine-specific DNA methyltransferase | GANTC | M1.Hpy90ORF49P |
| 50 | M | adenine-specific DNA methyltransferase | GANTC | M2.Hpy90ORF49P |
| 51 | R | Hpy67ORF49P (87% identity) | GANTC | Hpy90ORF49P |
| 52 | adenine specific DNA methyltransferase | |||
| 60 | terC family integral membrane protein | |||
| 61 | M | M.HpyGU71CORFAP (100% identity) | CCTC | M1.Hpy90ORF61P |
| 62 | M | M2.HpyF233ORFFP (99% identity) | CCTC | M2.Hpy90ORF61P |
| 63 | R | Hpy67ORF60P (100% identity) | CCTC | Hpy90ORF61P |
| 64 | uncharacterized protein | |||
| 64 | uncharacterized protein | |||
| 65 | M | M.HpyJF13ORF63P (100% identity) | GTSAC | M.Hpy90ORF65P |
| ??? | R | Hpyfe63ORF7595P (100% identity) | GTSAC | Hpy90ORF65P |
| 67 | adenine/cytosine DNA methyltransferase | |||
| 152 | alpha-1,2-fucosyltransferase | |||
| 153 | M | M.Hpy67ORF150P (98% identity) | GATC | M.Hpy90ORF153P |
| ??? | R | HpyJF13ORF148P (100% identity) | GATC | Hpy90ORF153P |
| 156 | tetratricopeptide TPR_2 repeat protein | |||
| 293 | exodeoxyribonuclease VII large subunit | |||
| 294 | M | M.HpyF211ORF285P (100% identity) | TCGA | M.Hpy90ORF294P |
| 295 | uncharacterized protein | |||
| 295 | uncharacterized protein | |||
| 296 | R | Hpy67ORF294P (100% identity) | CCGG | Hpy90ORF297P |
| 297 | M | adenine-specific DNA methyltransferase | M.Hpy90ORF297P | |
| 298 | adenine-specific DNA methyltransferase | |||
| 346 | polysaccharide deacetylase family protein | |||
| 347 | R | HpyJ015VIIP (100% identity) | CTNAG | Hpy90ORF348P |
| 348 | M | M.HpyJF13ORF342P (100% identity) | CTNAG | M.Hpy90ORF348P |
| 349 | uncharacterized protein | |||
| 488 | outer membrane protein | |||
| 489 | M | M.Hpy67ORF485P (99% identity) | ATTAAT | M.Hpy90ORF489P |
| 490 | type II adenine specific methyltransferase | |||
| 491 | GTP-binding protein TypA | |||
| 492 | M | M.HpyMKM1ORF487P (94% identity) | ACNGT | M.Hpy90ORF492P |
| 493 | R | HpyJF13ORF490P (70% identity) | ACNGT | Hpy90ORF492P |
| 494 | catalase-like protein | |||
| 672 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyJ029ORF3440P (86% identity) | Hpy90ORF673P | |
| 677 | outer membrane protein | |||
| 692 | polysaccharide biosynthesis protein | |||
| 693 | M | M.HpyTN2ORF7450P (100% identity) | M.Hpy90ORF693P | |
| 694 | R | HpyTN2ORF7450P (100% identity) | Hpy90ORF693P | |
| 695 | polysaccharide biosynthesis protein | |||
| 927 | flagellar hook protein FlgE | |||
| 928 | R | HpyBS07ORF2340P (96% identity) | GTNNAC | Hpy90ORF929P |
| 929 | M | M.HpyK036VIII (97% identity) | GTNNAC | M.Hpy90ORF929P |
| 930 | rep helicase, single-stranded DNA-dependent | |||
| 1063 | biotin carboxylase | |||
| 1064 | M | M.Hpy70ORF1047P (100% identity) | TCNNGA | M.Hpy90ORF1064P |
| 1065 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | Hpy90ORF1064P |
| 1066 | laminin subunit alpha-2 precursor | |||
| 1095 | uncharacterized protein | |||
| 1096 | M | M.HpyMKM5ORF1090P (100% identity) | GCGC | M.Hpy90ORF1096P |
| 1097 | flgM protein | |||
| 1180 | haloacid dehalogenase-like hydrolase | |||
| 1181 | M | M.Hpy67ORF1175P (100% identity) | CATG | M.Hpy90ORF1181P |
| ??? | R | Hpy67ORF1175P (99% identity) | CATG | Hpy90ORF1181P |
| 1184 | serine O-acetyltransferase | |||
| 1346 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1347 | R | HpyJF13ORF1350P (99% identity) | Hpy90ORF1348P | |
| ??? | M | M.Hpy67ORF1342P (99% identity) | M.Hpy90ORF1348P | |
| 1350 | uncharacterized protein | |||
| 1401 | DNA polymerase I | |||
| 1402 | S | S.Hpy67ORF1398P (100% identity) | S.Hpy90ORF1403P | |
| 1403 | RM | HpyMKM6ORF1374P (98% identity) | Hpy90ORF1403P | |
| 1404 | hP1473-transformation associated protein | |||
| 1444 | transcription elongation factor NusA | |||
| 1445 | RM | HpyF226ORFDP (91% identity) | Hpy90ORF1445P | |
| 1446 | uncharacterized protein | |||
| 1481 | uncharacterized protein | |||
| ??? | M | Uncharacterized protein | TGCA | M.Hpy90ORF1482P |
| 1483 | R | Hpy67ORF1479P (100% identity) | TGCA | Hpy90ORF1482P |
| 1484 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 33 | rod shape-determining protein MreC | |||
| 34 | R | HpyF211ORF34P (99% identity) | Hpy90ORF35P | |
| ??? | M | M.Hpy67ORF36P (99% identity) | M.Hpy90ORF35P | |
| 37 | transcriptional regulator | |||
| 1331 | endonuclease | |||
| 1332 | M | M.Hpy67ORF1328P (100% identity) | M.Hpy90ORF1332P | |
| ??? | R | Hpy67ORF1328P (99% identity) | Hpy90ORF1332P | |
| 1335 | biotin synthase | |||
| 1446 | uncharacterized protein | |||
| 1447 | R | HpyF211ORF1429P (99% identity) | Hpy90ORF1448P | |
| ??? | M | M.Hpyfe66ORF40P (97% identity) | M.Hpy90ORF1448P | |
| 1450 | ATP-dependent DNA helicase RecG | |||