Helicobacter pylori F70 |
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Putative Helicobacter pylori F70 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,631,634 bp
GenBank #: AP017349
REBASE acronym: Hpy70
Org_num: 22619
All begin HPF70_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 466 | polyphosphate kinase | |||
| 467 | S | S.HpyF18KORF469P (98% identity) | S.Hpy70ORF468P | |
| 468 | M | M.HpyPF16ORF2205P (96% identity) | M.Hpy70ORF468P | |
| ??? | R | HpyF18KORF469P (94% identity) | Hpy70ORF468P | |
| 471 | uncharacterized protein | |||
| 526 | modification methylase HaeIII | |||
| 527 | M | M.Hpy04ORFAP (88% identity) | M.Hpy70ORF527P | |
| ??? | S | Type I restriction modification protein | S1.Hpy70ORF527P | |
| 529 | S | S.HpyMA18ORF4130P (19% identity) | S2.Hpy70ORF527P | |
| 530 | R | HpyF18KORF875P (98% identity) | Hpy70ORF527P | |
| 531 | hydroxyethylthiazole kinase | |||
| 1497 | FAD-dependent thymidylate synthase | |||
| 1498 | S | S1.Hpy1838CV (99% identity) | S.Hpy70ORF1500P | |
| 1499 | uncharacterized protein | |||
| ??? | M | M.HpyK25II (98% identity) | M.Hpy70ORF1500P | |
| 1502 | R | Hpy90ORF1463P (97% identity) | Hpy70ORF1500P | |
| 1503 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyCHN2ORF290P (85% identity) | Hpy70ORF46P | |
| 49 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 49 | M | M.HpyUM067ORF7150P (99% identity) | GANTC | M.Hpy70ORF49P |
| 50 | uncharacterized protein | |||
| ??? | R | HpyJ026ORF280P (99% identity) | GANTC | Hpy70ORF49P |
| 53 | protease | |||
| 60 | terC family integral membrane protein | |||
| 61 | M | M1.HpyMA10VIII (99% identity) | CCTC | M1.Hpy70ORF61P |
| 62 | M | M2.HpyF233ORFFP (98% identity) | CCTC | M2.Hpy70ORF61P |
| 63 | R | Hpy90ORF61P (99% identity) | CCTC | Hpy70ORF61P |
| 64 | uncharacterized protein | |||
| 64 | uncharacterized protein | |||
| 65 | M | M.HpyJF13ORF63P (100% identity) | GTSAC | M.Hpy70ORF65P |
| ??? | R | Hpyfe63ORF7595P (100% identity) | GTSAC | Hpy70ORF65P |
| 67 | adenine/cytosine DNA methyltransferase | |||
| 151 | alpha-1,2-fucosyltransferase | |||
| 152 | M | M.HpyOK95ORFLP (98% identity) | GATC | M.Hpy70ORF152P |
| ??? | R | HpyF93ORFLP (89% identity) | GATC | Hpy70ORF152P |
| 154 | tetratricopeptide TPR_2 repeat protein | |||
| 289 | exodeoxyribonuclease VII large subunit | |||
| 290 | M | M.HpyMKF10ORF325P (99% identity) | TCGA | M.Hpy70ORF290P |
| 291 | uncharacterized protein | |||
| ??? | R | Hpy55ORF295P (97% identity) | CCGG | Hpy70ORF290P |
| 294 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 294 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpy70ORF294P |
| 295 | ATP-dependent protease binding subunit | |||
| 341 | polysaccharide deacetylase family protein | |||
| ??? | R | HpySG17IVP (98% identity) | CTNAG | Hpy70ORF344P |
| ??? | M | M.Hpyfe124ORF5400P (99% identity) | CTNAG | M.Hpy70ORF344P |
| 346 | uncharacterized protein | |||
| 382 | GTP-binding protein LepA | |||
| 383 | M | M.Hpyoh1ORF4535P (99% identity) | M.Hpy70ORF383P | |
| 384 | uncharacterized protein | |||
| 484 | outer membrane protein | |||
| 485 | M | M.Hpy6ORF10040P (99% identity) | ATTAAT | M.Hpy70ORF485P |
| 486 | type II adenine specific methyltransferase | |||
| 487 | GTP-binding protein TypA | |||
| 488 | M | M.HpyV002II (100% identity) | ACNGT | M.Hpy70ORF488P |
| 489 | R | Hpyfe33ORF4780P (99% identity) | ACNGT | Hpy70ORF488P |
| 490 | uncharacterized protein | |||
| 524 | integral membrane protein | |||
| 525 | R | HpyTN2ORF5580P (99% identity) | GGCC | Hpy70ORF526P |
| 526 | M | M.HpyTN2ORF5580P (100% identity) | GGCC | M.Hpy70ORF526P |
| 527 | type I restriction-modification system, M | |||
| 585 | cadmium-transporting ATPase, P-type | |||
| 586 | M | M.Hpy24ORF578P (100% identity) | M.Hpy70ORF586P | |
| 587 | R | HpyJSHR6ORF8410P (100% identity) | Hpy70ORF586P | |
| 588 | outer membrane protein HofF | |||
| 702 | outer membrane protein HorF | |||
| ??? | RM | HpyF210ORF741P (83% identity) | Hpy70ORF703P | |
| 707 | glycerol-3-phosphate dehydrogenase | |||
| 909 | flagellar hook protein FlgE | |||
| 910 | R | Hpy4105ORFOP (93% identity) | GTNNAC | Hpy70ORF911P |
| 911 | M | M.HpySG08XIII (97% identity) | GTNNAC | M.Hpy70ORF911P |
| 912 | rep helicase, single-stranded DNA-dependent | |||
| 1046 | biotin carboxylase | |||
| 1047 | M | M.Hpy90ORF1064P (100% identity) | TCNNGA | M.Hpy70ORF1047P |
| 1048 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | Hpy70ORF1047P |
| 1049 | laminin subunit alpha-2 precursor | |||
| 1081 | uncharacterized protein | |||
| 1082 | M | M.HpyJ019XI (96% identity) | GCGC | M.Hpy70ORF1082P |
| 1083 | flgM protein | |||
| 1166 | haloacid dehalogenase-like hydrolase | |||
| 1167 | M | M.HpyM6CORFRP (99% identity) | CATG | M.Hpy70ORF1167P |
| ??? | R | HpyF209ORF1157P (100% identity) | CATG | Hpy70ORF1167P |
| 1170 | serine O-acetyltransferase | |||
| 1372 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1373 | R | Hpy1838CORF14870P (99% identity) | CGCG | Hpy70ORF1374P |
| 1374 | M | M.HpyF225ORFB1P (99% identity) | CGCG | M.Hpy70ORF1374P |
| 1375 | uncharacterized protein | |||
| 1430 | DNA polymerase I | |||
| 1431 | S | S.HpyOK308ORFCP (42% identity) | S1.Hpy70ORF1433P | |
| ??? | S | Hpy38ORF1425P (95% identity) | S2.Hpy70ORF1433P | |
| 1433 | RM | restriction enzyme BcgI alpha chain-like | Hpy70ORF1433P | |
| 1436 | hP1473-transformation associated protein | |||
| 1461 | permease; membrane protein | |||
| 1462 | M | M1.HpyOki128ORF6495P (99% identity) | CCATC | M1.Hpy70ORF1462P |
| 1463 | M | M2.HpyJA107IV (100% identity) | CCATC | M2.Hpy70ORF1462P |
| 1464 | R | Hpy1838CIVP (96% identity) | CCATC | Hpy70ORF1462P |
| 1465 | outer membrane protein HorK | |||
| 1481 | uncharacterized protein | |||
| 1482 | RM | type IIS restriction enzyme R and M protein | Hpy70ORF1482P | |
| 1483 | type II S restriction-modification protein | |||
| 1523 | uncharacterized protein | |||
| 1524 | M | M.HpyP90ORFTP (100% identity) | TGCA | M.Hpy70ORF1524P |
| 1525 | R | HpyDU7AORFUP (98% identity) | TGCA | Hpy70ORF1524P |
| 1526 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1318 | endonuclease | |||
| 1319 | M | M.HpyTW20ORF6825P (96% identity) | M.Hpy70ORF1319P | |
| 1320 | R | HpyOK316ORFDP (95% identity) | Hpy70ORF1319P | |
| 1321 | biotin synthase | |||
| 1483 | type II S restriction-modification protein | |||
| 1484 | R | Hpyfe89ORF40P (95% identity) | Hpy70ORF1485P | |
| ??? | M | M.HpyUM038ORF805P (98% identity) | M.Hpy70ORF1485P | |
| 1487 | ATP-dependent DNA helicase RecG | |||