Helicobacter pylori F67 |
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Putative Helicobacter pylori F67 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,587,581 bp
GenBank #: AP017348
REBASE acronym: Hpy67
Org_num: 22618
All begin HPF67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 466 | polyphosphate kinase | |||
| 467 | S | S.HpyKA2III (98% identity) | S.Hpy67ORF468P | |
| 468 | M | M.Hpy90ORF471P (98% identity) | M.Hpy67ORF468P | |
| 469 | R | Hpy90ORF471P (79% identity) | Hpy67ORF468P | |
| 469 | type I restriction enzyme R protein | |||
| 522 | phosphatidic acid phosphatase | |||
| 523 | M | M.HpyF211ORF519P (97% identity) | M.Hpy67ORF523P | |
| 524 | S | S.Hpy67ORF584P (97% identity) | S.Hpy67ORF523P | |
| 525 | R | HpyF233ORFPP (98% identity) | Hpy67ORF523P | |
| 526 | hydroxyethylthiazole kinase | |||
| 583 | cadmium-transporting ATPase, P-type | |||
| 584 | S | S.Hpy67ORF523P (97% identity) | S.Hpy67ORF584P | |
| 585 | outer membrane protein HofF | |||
| 1456 | FAD-dependent thymidylate synthase | |||
| 1457 | S | S.HpyJF13ORF1463P (98% identity) | S.Hpy67ORF1459P | |
| 1458 | uncharacterized protein | |||
| ??? | M | M.Hpyfe76ORF7445P (95% identity) | M.Hpy67ORF1459P | |
| 1461 | R | Hpy78ORF1507P (99% identity) | Hpy67ORF1459P | |
| 1462 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 47 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyTW10ORF280P (86% identity) | Hpy67ORF48P | |
| 49 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 49 | M | M.HpyMKF3ORF47P (99% identity) | GANTC | M.Hpy67ORF49P |
| 50 | R | Hpyfe38ORF6935P (97% identity) | GANTC | Hpy67ORF49P |
| 51 | adenine specific DNA methyltransferase | |||
| 59 | terC family integral membrane protein | |||
| 60 | M | M.HpyGU71CORFAP (100% identity) | CCTC | M1.Hpy67ORF60P |
| 61 | M | M2.Hpy90ORF61P (99% identity) | CCTC | M2.Hpy67ORF60P |
| 62 | R | Hpy90ORF61P (100% identity) | CCTC | Hpy67ORF60P |
| 63 | uncharacterized protein | |||
| 63 | uncharacterized protein | |||
| 64 | M | M.HpyJF13ORF63P (100% identity) | GTSAC | M.Hpy67ORF64P |
| ??? | R | Hpyfe63ORF7595P (100% identity) | GTSAC | Hpy67ORF64P |
| 66 | adenine/cytosine DNA methyltransferase | |||
| 149 | alpha-1,2-fucosyltransferase | |||
| 150 | M | M.Hpy90ORF153P (98% identity) | GATC | M.Hpy67ORF150P |
| ??? | R | HpyJF13ORF148P (100% identity) | GATC | Hpy67ORF150P |
| 153 | tetratricopeptide TPR_2 repeat protein | |||
| 290 | exodeoxyribonuclease VII large subunit | |||
| 291 | M | M.HpyF211ORF285P (100% identity) | TCGA | M.Hpy67ORF291P |
| 292 | uncharacterized protein | |||
| 292 | uncharacterized protein | |||
| 293 | R | Hpy90ORF297P (100% identity) | CCGG | Hpy67ORF294P |
| ??? | M | M.HpyJ002XI (98% identity) | M.Hpy67ORF294P | |
| 296 | ATP-dependent protease binding subunit | |||
| 342 | polysaccharide deacetylase family protein | |||
| 343 | R | HpyJ015VIIP (100% identity) | CTNAG | Hpy67ORF344P |
| 344 | M | M.HpyJF13ORF342P (100% identity) | CTNAG | M.Hpy67ORF344P |
| 345 | uncharacterized protein | |||
| 484 | outer membrane protein | |||
| 485 | M | M.HpyMKM1ORF484P (99% identity) | ATTAAT | M.Hpy67ORF485P |
| 486 | type II adenine specific methyltransferase | |||
| 487 | GTP-binding protein TypA | |||
| 488 | M | M.HpyMKM1ORF487P (95% identity) | ACNGT | M.Hpy67ORF488P |
| 489 | R | HpyJF13ORF490P (71% identity) | ACNGT | Hpy67ORF488P |
| 490 | catalase-like protein | |||
| 703 | polysaccharide biosynthesis protein | |||
| 704 | R | HpyMKM5ORF723P (100% identity) | CCNNGG | Hpy67ORF705P |
| 705 | M | M.HpyMKM5ORF723P (100% identity) | CCNNGG | M.Hpy67ORF705P |
| 706 | polysaccharide biosynthesis protein | |||
| 723 | 65 aa hypothetical protein | |||
| 724 | RM | Hpy3401ORF7780P (81% identity) | Hpy67ORF724BP | |
| 725 | RM | type IIG restriction-modification enzyme | Hpy67ORF724AP | |
| 726 | glycerol-3-phosphate dehydrogenase | |||
| 886 | m23/M37 family peptidase | |||
| 887 | R | HpyJ021VIIIP (98% identity) | GTAC | Hpy67ORF888P |
| 888 | M | M.HpyF210ORF900P (99% identity) | GTAC | M.Hpy67ORF888P |
| 889 | DNA gyrase subunit B | |||
| 924 | flagellar hook protein FlgE | |||
| 925 | R | HpyF225ORFPP (99% identity) | GTNNAC | Hpy67ORF926P |
| ??? | M | M.HpyHP94IX (97% identity) | GTNNAC | M.Hpy67ORF926P |
| 928 | rep helicase, single-stranded DNA-dependent | |||
| 1057 | biotin carboxylase | |||
| 1058 | M | M.Hpy90ORF1064P (100% identity) | TCNNGA | M.Hpy67ORF1058P |
| 1059 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | Hpy67ORF1058P |
| 1060 | laminin subunit alpha-2 precursor | |||
| 1090 | uncharacterized protein | |||
| 1091 | M | M.HpyMKM5ORF1090P (100% identity) | GCGC | M.Hpy67ORF1091P |
| 1092 | flgM protein | |||
| 1174 | haloacid dehalogenase-like hydrolase | |||
| 1175 | M | M.Hpy90ORF1181P (100% identity) | CATG | M.Hpy67ORF1175P |
| ??? | R | Hpy90ORF1181P (99% identity) | Hpy67ORF1175P | |
| 1178 | serine O-acetyltransferase | |||
| 1340 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1341 | R | HpyJF13ORF1350P (100% identity) | Hpy67ORF1342P | |
| 1342 | M | M.Hpy90ORF1348P (99% identity) | M.Hpy67ORF1342P | |
| 1343 | uncharacterized protein | |||
| 1396 | DNA polymerase I | |||
| 1397 | S | S.Hpy90ORF1403P (100% identity) | S.Hpy67ORF1398P | |
| 1398 | RM | HpyMKM6ORF1374P (99% identity) | Hpy67ORF1398P | |
| 1399 | hP1473-transformation associated protein | |||
| 1441 | transcription elongation factor NusA | |||
| 1442 | RM | HpyK035ORF7140P (90% identity) | Hpy67ORF1442P | |
| 1443 | uncharacterized protein | |||
| 1478 | uncharacterized protein | |||
| 1479 | M | M.Hpy38ORF1508P (100% identity) | TGCA | M.Hpy67ORF1479P |
| 1480 | R | Hpy90ORF1482P (100% identity) | TGCA | Hpy67ORF1479P |
| 1481 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 34 | rod shape-determining protein MreC | |||
| 35 | R | Hpy90ORF35P (99% identity) | Hpy67ORF36P | |
| 36 | M | M.Hpy90ORF35P (99% identity) | M.Hpy67ORF36P | |
| 37 | transcriptional regulator | |||
| 1327 | endonuclease | |||
| ??? | M | M.Hpy90ORF1332P (100% identity) | M.Hpy67ORF1328P | |
| 1330 | R | Hpy90ORF1332P (99% identity) | Hpy67ORF1328P | |
| 1331 | biotin synthase | |||
| 1443 | uncharacterized protein | |||
| 1444 | R | HpyF233ORFBP (99% identity) | Hpy67ORF1445P | |
| ??? | M | M.HpyP98ORFRP (96% identity) | M.Hpy67ORF1445P | |
| 1447 | ATP-dependent DNA helicase RecG | |||