Helicobacter pylori F55 |
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Putative Helicobacter pylori F55 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,623,153 bp
GenBank #: AP017345
REBASE acronym: Hpy55
Org_num: 22616
All begin HPF55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 468 | polyphosphate kinase | |||
| 469 | S | S.HpyTN2ORF5020P (99% identity) | S.Hpy55ORF470P | |
| ??? | M | M.HpyOK302ORFTP (97% identity) | M.Hpy55ORF470P | |
| 472 | R | HpyK117ORF2250P (94% identity) | Hpy55ORF470P | |
| 473 | uncharacterized protein | |||
| 846 | outer membrane protein HofF | |||
| 847 | S | S.Hpy102ORF3095P (97% identity) | S.Hpy55ORF847P | |
| 848 | anti-codon nuclease masking agent PrrB | |||
| 905 | hydroxyethylthiazole kinase | |||
| 906 | R | HpyTN2ORF5590P (97% identity) | Hpy55ORF909P | |
| 907 | S | S.HpyNCI28ORFA1P (98% identity) | S1.Hpy55ORF909P | |
| 908 | S | S.HpyME32ORF3930P (40% identity) | S2.Hpy55ORF909P | |
| 909 | M | M.HpyMKM1ORF853P (96% identity) | M.Hpy55ORF909P | |
| 910 | modification methylase HaeIII | |||
| 1501 | FAD-dependent thymidylate synthase | |||
| 1502 | S | S.HpyOK88ORFGP (92% identity) | S.Hpy55ORF1503P | |
| 1503 | M | M.HpyGU82AORF17020P (99% identity) | M.Hpy55ORF1503P | |
| 1504 | R | Hpy24ORF1436P (99% identity) | Hpy55ORF1503P | |
| 1505 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyOK34ORFKP (94% identity) | Hpy55ORF47P | |
| 50 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 50 | M | M.HpyGU62AORFKP (89% identity) | GANTC | M.Hpy55ORF50P |
| 51 | R | HpyK154ORF6905P (85% identity) | GANTC | Hpy55ORF50P |
| 52 | protease | |||
| 59 | membrane protein TerC | |||
| ??? | M | M1.HpyOK305ORFBP (98% identity) | M.Hpy55ORF60P | |
| 62 | sodium/proline symporter | |||
| 148 | alpha-1,2-fucosyltransferase | |||
| 149 | M | M.HpyF93ORFLP (99% identity) | GATC | M.Hpy55ORF149P |
| 150 | R | HpyF211ORF143P (97% identity) | GATC | Hpy55ORF149P |
| 151 | tetratricopeptide TPR_2 repeat protein | |||
| 206 | elongation factor P | |||
| 207 | R | R1.HpyJSHR3ORF3510P (99% identity) | R1.Hpy55ORF207P | |
| 208 | R | R2.HpyTN2ORF2420P (100% identity) | R2.Hpy55ORF207P | |
| 209 | sialic acid synthase | |||
| 207 | 5-methylcytosine-specific restriction enzyme B | |||
| 208 | R | R2.HpyTN2ORF2420P (100% identity) | Hpy55ORF208P | |
| 209 | sialic acid synthase | |||
| 290 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyJ013X (98% identity) | TCGA | M.Hpy55ORF291P |
| 292 | uncharacterized protein | |||
| 292 | uncharacterized protein | |||
| ??? | R | Hpy70ORF290P (97% identity) | CCGG | Hpy55ORF295P |
| 295 | M | M.Hpy72ORF296P (69% identity) | CCGG | M.Hpy55ORF295P |
| 296 | ATP-dependent protease binding subunit | |||
| 344 | polysaccharide deacetylase family protein | |||
| 345 | R | HpyJA101VIIP (99% identity) | CTNAG | Hpy55ORF346P |
| 346 | M | M.Hpyfe6ORF5470P (99% identity) | CTNAG | M.Hpy55ORF346P |
| 347 | uncharacterized protein | |||
| 488 | outer membrane protein | |||
| 489 | M | M.HpyF210ORF500P (98% identity) | ATTAAT | M.Hpy55ORF489P |
| 490 | DD-heptosyltransferase | |||
| 491 | GTP-binding protein TypA | |||
| ??? | M | M.HpyTN2ORF5220P (93% identity) | ACNGT | M.Hpy55ORF492P |
| 494 | R | HpyK013ORF2470P (99% identity) | ACNGT | Hpy55ORF492P |
| 495 | catalase-like protein | |||
| 513 | DNA gyrase subunit B | |||
| 514 | M | M.HpyM5CORFYP (99% identity) | GTAC | M.Hpy55ORF514P |
| 515 | R | HpyPF16IXP (99% identity) | GTAC | Hpy55ORF514P |
| 516 | m23/M37 family peptidase | |||
| 680 | restriction endonuclease superfamily protein | |||
| 681 | RM | HpyMA08ORF3330P (88% identity) | Hpy55ORF681P | |
| 682 | outer membrane protein | |||
| 909 | type I restriction-modification system, M | |||
| 910 | M | M.HpyTN2ORF5580P (100% identity) | GGCC | M.Hpy55ORF910P |
| 911 | R | Hpy35ORF20746P (99% identity) | GGCC | Hpy55ORF910P |
| 912 | integral membrane protein | |||
| 968 | flagellar hook protein FlgE | |||
| 969 | R | HpyGU83AORFCP (97% identity) | GTNNAC | Hpy55ORF970P |
| 970 | M | M.Hpy70ORF911P (97% identity) | GTNNAC | M.Hpy55ORF970P |
| 971 | rep helicase, single-stranded DNA-dependent | |||
| 1099 | biotin carboxylase | |||
| 1100 | M | M.HpyV004XII (98% identity) | TCNNGA | M.Hpy55ORF1100P |
| 1101 | R | Hpyfe103ORF2025P (99% identity) | TCNNGA | Hpy55ORF1100P |
| 1102 | laminin subunit alpha-2 precursor | |||
| 1134 | uncharacterized protein | |||
| 1135 | M | M.HpyJ013XI (99% identity) | GCGC | M.Hpy55ORF1135P |
| 1136 | negative regulator of flagellin synthesis FlgM | |||
| 1218 | haloacid dehalogenase | |||
| 1219 | M | M.HpyF219ORFLP (96% identity) | CATG | M.Hpy55ORF1219P |
| 1220 | R | HpyJF72ORFAP (95% identity) | CATG | Hpy55ORF1219P |
| 1221 | serine O-acetyltransferase | |||
| 1439 | uncharacterized protein | |||
| 1440 | M | M1.HpyK013VII (100% identity) | GGATG | M1.Hpy55ORF1440P |
| 1441 | M | M1.Hpyfe22ORF285P (99% identity) | GGATG | M2.Hpy55ORF1440P |
| 1442 | R | Hpy83ORF1453P (100% identity) | GGATG | Hpy55ORF1440P |
| 1443 | hP1473-transformation associated protein | |||
| 1468 | permease; membrane protein | |||
| 1469 | M | M1.HpyMKF3ORF1427P (99% identity) | CCATC | M1.Hpy55ORF1469P |
| 1470 | M | M2.HpyUM037VI (99% identity) | CCATC | M2.Hpy55ORF1469P |
| 1471 | R | Hpyfe76ORF140P (98% identity) | CCATC | Hpy55ORF1469P |
| 1472 | outer membrane protein HopK | |||
| 1486 | uncharacterized protein | |||
| 1487 | RM | HpyGU83AORFDP (94% identity) | Hpy55ORF1487P | |
| 1488 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1370 | type II citrate synthase | |||
| 1371 | M | M.HpyMKM5ORF1323P (98% identity) | M.Hpy55ORF1371P | |
| 1372 | R | Hpy928ORFWP (92% identity) | Hpy55ORF1371P | |
| 1373 | biotin synthase | |||
| 1488 | uncharacterized protein | |||
| 1489 | R | HpyJ013ORF7255P (98% identity) | Hpy55ORF1490P | |
| 1490 | M | M.HpyF210ORF1472P (96% identity) | M.Hpy55ORF1490P | |
| 1491 | ATP-dependent DNA helicase RecG | |||