Helicobacter pylori F38 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori F38 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,626,538 bp
GenBank #: AP017341
REBASE acronym: Hpy38
Org_num: 22614
All begin HPF38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 475 | polyphosphate kinase | |||
| 476 | S | S.HpyF20JORF793P (98% identity) | S.Hpy38ORF477P | |
| 477 | M | M.Hpyfe114ORF4890P (97% identity) | M.Hpy38ORF477P | |
| 478 | R | Hpyfe122ORF4885P (94% identity) | Hpy38ORF477P | |
| 479 | uncharacterized protein | |||
| 662 | outer membrane protein HofF | |||
| 663 | S | S.HpyPE17XII (83% identity) | S1.Hpy38ORF663P | |
| ??? | S | S2.Hpy38ORF724P (100% identity) | S2.Hpy38ORF663P | |
| 665 | cadmium-transporting ATPase, P-type | |||
| 720 | hydroxyethylthiazole kinase | |||
| 721 | R | HpyF20JORF741P (97% identity) | Hpy38ORF724P | |
| 722 | S | S.HpyF235ORFMP (42% identity) | S1.Hpy38ORF724P | |
| ??? | S | S2.Hpy38ORF663P (100% identity) | S2.Hpy38ORF724P | |
| ??? | M | M.HpyH390dORF4575P (81% identity) | M.Hpy38ORF724P | |
| 727 | integral membrane protein | |||
| 1482 | 271 aa hypothetical protein | |||
| 1483 | S | S.Hpy28ORF1462P (96% identity) | S.Hpy38ORF1484P | |
| 1484 | M | M.Hpy28ORF1462P (99% identity) | M.Hpy38ORF1484P | |
| 1485 | R | Hpyfe23ORF7685P (97% identity) | Hpy38ORF1484P | |
| 1486 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| 38 | M | M1.Hpy28ORF36P (100% identity) | GAAGA | M1.Hpy38ORF38P |
| 39 | M | M1.Hpyfe36ORF6935P (100% identity) | GAAGA | M2.Hpy38ORF38P |
| 40 | R | Hpy28ORF36P (100% identity) | GAAGA | Hpy38ORF38P |
| 41 | transcriptional regulator | |||
| 51 | nicotinate-nucleotide pyrophosphorylase | |||
| 52 | RM | Hpyfe126ORF6995P (66% identity) | Hpy38ORF52AP | |
| 52 | RM | HpyH137ORF7340P (21% identity) | Hpy38ORF52BP | |
| 53 | RM | adenine specific DNA methyltransferase | Hpy38ORF52CP | |
| 54 | protease | |||
| 61 | terC family integral membrane protein | |||
| 62 | M | M2.HpyOK305ORFBP (98% identity) | CCTC | M1.Hpy38ORF62P |
| 63 | M | M2.HpyF210ORF58P (99% identity) | CCTC | M2.Hpy38ORF62P |
| 64 | R | HpyF210ORF58P (98% identity) | CCTC | Hpy38ORF62P |
| 65 | adenine/cytosine DNA methyltransferase | |||
| 109 | hrgA protein | |||
| 110 | M | M.Hpy28ORF103P (99% identity) | M.Hpy38ORF110P | |
| 111 | alpha-1,2-fucosyltransferase | |||
| 299 | exodeoxyribonuclease VII large subunit | |||
| 300 | M | M.HpyGU1CORF2850P (99% identity) | TCGA | M.Hpy38ORF300P |
| 301 | uncharacterized protein | |||
| ??? | R | Hpyfe51ORF5980P (86% identity) | CCGG | Hpy38ORF300P |
| 304 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 304 | M | M.Hpyfe59ORF5820P (99% identity) | CCGG | M.Hpy38ORF304P |
| 305 | ATP-dependent protease binding subunit | |||
| 492 | outer membrane protein | |||
| 493 | M | M.HpySP313ORF2240P (91% identity) | ATTAAT | M.Hpy38ORF493P |
| 494 | DD-heptosyltransferase | |||
| 495 | GTP-binding protein TypA | |||
| 496 | M | M.Hpy28ORF488P (100% identity) | ACGT | M.Hpy38ORF496P |
| 497 | R | HpyF75ORF493P (100% identity) | ACGT | Hpy38ORF496P |
| 498 | catalase-like protein | |||
| 529 | polysaccharide biosynthesis protein | |||
| 531 | R | Hpyfe85ORF3790P (99% identity) | Hpy38ORF532P | |
| 532 | M | M.HpyK117ORF3455P (100% identity) | M.Hpy38ORF532P | |
| 533 | polysaccharide biosynthesis protein | |||
| 550 | outer membrane protein HorF | |||
| 551 | RM | HpyAR8ORF3340P (73% identity) | Hpy38ORF551BP | |
| 552 | RM | HpyMKM5ORF699P (19% identity) | Hpy38ORF551AP | |
| 553 | glycerol-3-phosphate dehydrogenase | |||
| 897 | peptidase M23B | |||
| 898 | R | Hpyfe52ORF2915P (98% identity) | GTAC | Hpy38ORF899P |
| 899 | M | M.HpyGC26ORFB1P (97% identity) | GTAC | M.Hpy38ORF899P |
| 900 | DNA gyrase subunit B | |||
| 936 | flagellar hook protein FlgE | |||
| 937 | R | HpyK016XIP (93% identity) | GTNNAC | Hpy38ORF938P |
| 938 | M | M.HpyJA107IX (97% identity) | GTNNAC | M.Hpy38ORF938P |
| 939 | rep helicase, single-stranded DNA-dependent | |||
| 1070 | biotin carboxylase | |||
| 1071 | M | M.HpyP98ORFEP (100% identity) | TCNNGA | M.Hpy38ORF1071P |
| 1072 | R | Hpyfe37ORF2030P (99% identity) | TCNNGA | Hpy38ORF1071P |
| 1073 | laminin subunit alpha-2 precursor | |||
| 1105 | uncharacterized protein | |||
| 1106 | M | M.HpyK101XVI (99% identity) | GCGC | M.Hpy38ORF1106P |
| 1107 | temporal regulator of flagellar apparatus | |||
| 1163 | outer membrane protein | |||
| 1164 | M | M.Hpyfe48ORF1580P (100% identity) | TCNGA | M.Hpy38ORF1164P |
| 1165 | R | Hpy28ORF1143P (99% identity) | TCNGA | Hpy38ORF1164P |
| 1166 | purine-nucleoside phosphorylase | |||
| 1194 | haloacid dehalogenase-like hydrolase | |||
| 1195 | M | M.Hpy28ORF1174P (100% identity) | CATG | M.Hpy38ORF1195P |
| 1196 | R | HpyJF38ORFAP (100% identity) | CATG | Hpy38ORF1195P |
| 1197 | serine O-acetyltransferase | |||
| 1410 | cytochrome c551 peroxidase | |||
| 1411 | R | Hpy28ORF1387P (99% identity) | Hpy38ORF1412P | |
| 1412 | M | M1.Hpy28ORF1387P (99% identity) | M1.Hpy38ORF1412P | |
| 1413 | M | M2.Hpy3ORF14470P (100% identity) | M2.Hpy38ORF1412P | |
| 1414 | addiction module antidote protein | |||
| 1423 | DNA polymerase I | |||
| 1424 | S | S.HpyF209ORF1377P (100% identity) | S.Hpy38ORF1425P | |
| ??? | RM | Hpy86ORF580P (97% identity) | Hpy38ORF1425P | |
| 1427 | hP1473-transformation associated protein | |||
| 1467 | transcription elongation factor NusA | |||
| 1468 | RM | HpyMKF3ORF1445P (91% identity) | Hpy38ORF1468P | |
| 1469 | type III restriction enzyme R protein | |||
| 1507 | uncharacterized protein | |||
| 1508 | M | M.Hpy67ORF1479P (100% identity) | TGCA | M.Hpy38ORF1508P |
| 1509 | R | Hpy90ORF1482P (100% identity) | TGCA | Hpy38ORF1508P |
| 1510 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 34 | rod shape-determining protein MreC | |||
| 35 | R | Hpy28ORF34P (96% identity) | Hpy38ORF36P | |
| ??? | M | M.Hpybs3ORFXP (97% identity) | M.Hpy38ORF36P | |
| 38 | type IIS restriction enzyme M2 protein | |||
| 1349 | multidrug resistance protein | |||
| 1350 | M | M.Hpy17ORF1304P (98% identity) | M.Hpy38ORF1350P | |
| 1351 | R | Hpyfe8ORF20P (88% identity) | Hpy38ORF1350P | |
| 1352 | biotin synthase | |||
| 1468 | type IIS restriction enzyme R and M protein | |||
| 1469 | R | HpyTW04ORF7140P (97% identity) | Hpy38ORF1470P | |
| ??? | M | M.Hpy28ORF1447P (97% identity) | M.Hpy38ORF1470P | |
| 1472 | ATP-dependent DNA helicase RecG | |||