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Putative Helicobacter pylori F24 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,570,268 bp
GenBank #: AP017338
REBASE acronym: Hpy24
Org_num: 22612
All begin HPF24_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
458 | polyphosphate kinase | |||
459 | S | S.HpyDU7AORFFP (99% identity) | S.Hpy24ORF460P | |
460 | M | M.HpyK022IX (97% identity) | M.Hpy24ORF460P | |
??? | R | HpyTW10ORF2270P (92% identity) | Hpy24ORF460P | |
464 | uncharacterized protein | |||
518 | integral membrane protein | |||
519 | M | M.HpyF211ORF519P (97% identity) | M.Hpy24ORF519P | |
520 | S | S.HpyU011ORF2670P (94% identity) | S.Hpy24ORF519P | |
521 | R | HpyF235ORFLP (97% identity) | Hpy24ORF519P | |
522 | hydroxyethylthiazole kinase | |||
1432 | FAD-dependent thymidylate synthase | |||
1433 | S | S.HpyJSHR6ORF14880P (99% identity) | S.Hpy24ORF1436P | |
1434 | uncharacterized protein | |||
1435 | uncharacterized protein | |||
??? | M | M.Hpyfe126ORF7605P (96% identity) | M.Hpy24ORF1436P | |
??? | R | Hpy55ORF1503P (99% identity) | Hpy24ORF1436P | |
1440 | phosphonate metabolism protein PhnI | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
32 | type IIS restriction enzyme R protein | |||
33 | M | M1.HpyTW24V (100% identity) | GAAGA | M1.Hpy24ORF31P |
34 | M | M1.HpyJSHR6ORF13800P (99% identity) | GAAGA | M2.Hpy24ORF31P |
35 | R | HpyDU7AORFCP (86% identity) | Hpy24ORF31P | |
35 | type IIS restriction enzyme R protein | |||
46 | nicotinate-nucleotide pyrophosphorylase | |||
??? | RM | Hpy4125ORFJP (91% identity) | Hpy24ORF47P | |
49 | adenine-specific DNA methyltransferase | |||
??? | hypothetical protein | |||
49 | M | M.HpyF227ORFFP (99% identity) | GANTC | M.Hpy24ORF49P |
??? | R | HpyTW09IIIP (89% identity) | GANTC | Hpy24ORF49P |
52 | protease | |||
59 | terC family integral membrane protein | |||
??? | M | M1.Hpy3401ORF1550P (98% identity) | CCTC | M1.Hpy24ORF60P |
62 | M | M1.HpyJSHR6ORF13520P (100% identity) | CCTC | M2.Hpy24ORF60P |
63 | sodium/proline symporter | |||
150 | alpha-1,2-fucosyltransferase | |||
151 | M | M.Hpy3ORF2320P (98% identity) | M.Hpy24ORF151P | |
152 | hrgA protein | |||
286 | exodeoxyribonuclease VII large subunit | |||
287 | M | M.HpyPF16XI (99% identity) | TCGA | M.Hpy24ORF287P |
288 | uncharacterized protein | |||
289 | type III adenine methyltransferase | |||
290 | R | HpyF94ORF968P (99% identity) | CCGG | Hpy24ORF291P |
291 | M | M.HpyF18KORF294P (99% identity) | CCGG | M.Hpy24ORF291P |
292 | ATP-dependent protease binding subunit | |||
481 | outer membrane protein HopK | |||
482 | M | M.HpyF233ORFOP (99% identity) | ATTAAT | M.Hpy24ORF482P |
483 | type II adenine specific methyltransferase | |||
484 | GTP-binding protein TypA | |||
485 | M | M.HpyJA106II (99% identity) | ACNGT | M.Hpy24ORF485P |
486 | R | Hpyfe33ORF4780P (100% identity) | ACNGT | Hpy24ORF485P |
487 | catalase-like protein | |||
577 | cadmium-transporting ATPase, P-type | |||
578 | M | M.Hpy70ORF586P (100% identity) | M.Hpy24ORF578P | |
579 | R | HpyJSHR6ORF8410P (100% identity) | Hpy24ORF578P | |
580 | hof-family outer membrane protein | |||
691 | outer membrane protein | |||
692 | RM | Hpy63ORF693P (67% identity) | Hpy24ORF692BP | |
693 | RM | HpyG272ORF3895AP (92% identity) | Hpy24ORF692AP | |
694 | glycerol-3-phosphate dehydrogenase | |||
864 | m23/M37 family peptidase | |||
865 | R | HpySG19VIIIP (98% identity) | GTAC | Hpy24ORF866P |
866 | M | M.HpyJSHR6ORF5710P (99% identity) | GTAC | M.Hpy24ORF866P |
867 | DNA gyrase subunit B | |||
903 | flagellar hook protein FlgE | |||
904 | R | HpyK044IXP (98% identity) | GTNNAC | Hpy24ORF905P |
905 | M | M.Hpy1867AORF8960P (98% identity) | GTNNAC | M.Hpy24ORF905P |
906 | rep helicase, single-stranded DNA-dependent | |||
1036 | biotin carboxylase | |||
1037 | M | M.Hpy5ORF11370P (100% identity) | TCNNGA | M.Hpy24ORF1037P |
1038 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | Hpy24ORF1037P |
1039 | laminin subunit alpha-2 precursor | |||
1070 | uncharacterized protein | |||
1071 | M | M.HpyK51ORF1049P (98% identity) | M.Hpy24ORF1071P | |
1072 | negative regulator of flagellin synthesis FlgM | |||
1153 | haloacid dehalogenase-like hydrolase | |||
1154 | M | M.HpyJSHR6ORF2790P (100% identity) | CATG | M.Hpy24ORF1154P |
1155 | iceA2 protein | |||
1370 | DNA polymerase I | |||
1371 | S | S.HpyJ015ORF6975P (98% identity) | S.Hpy24ORF1372P | |
1372 | RM | HpyPF57ORF7025P (99% identity) | Hpy24ORF1372P | |
1373 | hP1473-transformation associated protein | |||
1398 | permease; membrane protein | |||
1399 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M1.Hpy24ORF1399P |
??? | M | M2.HpyMKM6ORF1401P (100% identity) | M2.Hpy24ORF1399P | |
??? | R | HpyMKM6ORF1401P (99% identity) | Hpy24ORF1399P | |
1405 | outer membrane protein HorK | |||
1418 | transcription elongation factor NusA | |||
1419 | RM | HpyDU7AORFRP (97% identity) | Hpy24ORF1419P | |
1420 | type III restriction enzyme R protein | |||
1456 | uncharacterized protein | |||
1457 | M | M.HpyDU7AORFUP (99% identity) | TGCA | M.Hpy24ORF1457P |
1458 | R | HpyDU7AORFUP (99% identity) | TGCA | Hpy24ORF1457P |
1459 | uncharacterized protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1305 | endonuclease | |||
1306 | M | M.HpyK021ORF6500P (95% identity) | M.Hpy24ORF1306P | |
1307 | R | HpyDU7AORFOP (89% identity) | Hpy24ORF1306P | |
1308 | biotin synthase | |||
1419 | type IIS restriction enzyme R and M protein | |||
1420 | R | HpyDU7AORFSP (98% identity) | Hpy24ORF1421P | |
1421 | M | M.Hpyfe88ORF40P (97% identity) | M.Hpy24ORF1421P | |
1422 | ATP-dependent DNA helicase RecG |