Helicobacter pylori F23 |
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Putative Helicobacter pylori F23 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,558,697 bp
GenBank #: AP017337
REBASE acronym: Hpy23
Org_num: 22611
All begin HPF23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 670 | outer membrane protein HofF | |||
| 671 | S | S.HpyHP76XVI (98% identity) | S.Hpy23ORF671P | |
| 672 | cadmium-transporting ATPase, P-type | |||
| 728 | hydroxyethylthiazole kinase | |||
| 729 | R | Hpy28ORF866P (91% identity) | Hpy23ORF730P | |
| 730 | M | M.Hpy1829AORF5320P (97% identity) | M.Hpy23ORF730P | |
| 731 | modification methylase HaeIII | |||
| 785 | uncharacterized protein | |||
| 786 | R | HpyJ022ORF2295P (95% identity) | Hpy23ORF787P | |
| 787 | M | M.HpyK047ORF2230P (97% identity) | M.Hpy23ORF787P | |
| 788 | S | S.HpyF228ORFKP (99% identity) | S.Hpy23ORF787P | |
| 789 | polyphosphate kinase | |||
| 1423 | FAD-dependent thymidylate synthase | |||
| 1424 | S | S.HpyF94ORF1433P (100% identity) | S.Hpy23ORF1426P | |
| 1425 | uncharacterized protein | |||
| 1426 | M | M.HpyMKM6ORF1442P (97% identity) | M.Hpy23ORF1426P | |
| ??? | R | Hpyfe74ORF7605P (97% identity) | Hpy23ORF1426P | |
| 1429 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | nicotinate-nucleotide pyrophosphorylase | |||
| 46 | RM | HpyK020ORF275P (94% identity) | GANTC | Hpy23ORF46AP |
| 47 | RM | adenine specific DNA methyltransferase | GANTC | Hpy23ORF46BP |
| 48 | RM | adenine specific DNA methyltransferase | GANTC | Hpy23ORF46CP |
| 49 | M | M.Hpyfe101ORF6910P (99% identity) | GANTC | M.Hpy23ORF46P |
| 50 | RM | HpyK050VIP (97% identity) | GANTC | Hpy23ORF46P |
| 51 | protease | |||
| 58 | terC family integral membrane protein | |||
| 59 | M | M2.Hpyfe17ORF6815P (99% identity) | CCTC | M1.Hpy23ORF59P |
| 60 | M | M1.Hpyfe78ORF6990P (78% identity) | CCTC | M2.Hpy23ORF59P |
| 61 | sodium/proline symporter | |||
| 186 | negative regulator of flagellin synthesis FlgM | |||
| 187 | M | M.Hpy1888AORF10720P (99% identity) | GCGC | M.Hpy23ORF187P |
| 188 | uncharacterized protein | |||
| 220 | laminin subunit alpha-2 precursor | |||
| 221 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | Hpy23ORF222P |
| 222 | M | M.HpyF94ORF215P (99% identity) | TCNNGA | M.Hpy23ORF222P |
| 223 | biotin carboxylase | |||
| 351 | rep helicase, single-stranded DNA-dependent | |||
| 352 | M | M.HpyMKF8ORF913P (98% identity) | GTNNAC | M.Hpy23ORF352P |
| 353 | R | HpyOK313ORFTP (98% identity) | GTNNAC | Hpy23ORF352P |
| 354 | flagellar hook protein FlgE | |||
| 391 | DNA gyrase subunit B | |||
| 392 | M | M.Hpy1888AXII (99% identity) | GTAC | M.Hpy23ORF392P |
| ??? | R | HpyF94ORF748P (100% identity) | GTAC | Hpy23ORF392P |
| 395 | m23/M37 family peptidase | |||
| 565 | uncharacterized protein | |||
| 566 | RM | HpyJ016ORF3390P (58% identity) | Hpy23ORF566BP | |
| 567 | RM | Hpy1829AORF7140P (33% identity) | Hpy23ORF566AP | |
| 568 | glycerol-3-phosphate dehydrogenase | |||
| 730 | type I restriction-modification system, M | |||
| 731 | M | M.HpyTN2ORF5580P (100% identity) | M.Hpy23ORF731P | |
| 732 | R | HpyF94ORF399P (99% identity) | Hpy23ORF731P | |
| 733 | phosphatidic acid phosphatase | |||
| 763 | catalase-like protein | |||
| 764 | R | Hpy72ORF490P (99% identity) | ACGT | Hpy23ORF765P |
| 765 | M | M.HpyMKF3ORF515P (100% identity) | ACGT | M.Hpy23ORF765P |
| 766 | type II restriction endonuclease | |||
| 765 | DNA cytosine methyltransferase | |||
| 766 | R | HpyMKF3ORF514P (100% identity) | ACNGT | Hpy23ORF767P |
| ??? | M | M2.HpyMKF3ORF509P (99% identity) | ACNGT | M.Hpy23ORF767P |
| 769 | GTP-binding protein TypA | |||
| 770 | type II adenine specific methyltransferase | |||
| 771 | M | M.Hpy21ORF779P (99% identity) | ATTAAT | M.Hpy23ORF771P |
| 772 | outer membrane protein | |||
| 909 | uncharacterized protein | |||
| 910 | M | M.HpyM6CORFIP (99% identity) | CTNAG | M.Hpy23ORF910P |
| 911 | R | HpyJ028VP (99% identity) | CTNAG | Hpy23ORF910P |
| 912 | polysaccharide deacetylase family protein | |||
| 959 | ATP-dependent protease binding subunit | |||
| 960 | M | M.HpyP90ORFAP (100% identity) | CCGG | M.Hpy23ORF960P |
| 961 | R | HpyMKF3ORF317P (98% identity) | CCGG | Hpy23ORF960P |
| 962 | exodeoxyribonuclease VII large subunit | |||
| 1099 | tetratricopeptide TPR_2 repeat protein | |||
| 1100 | R | HpyTW02IXP (97% identity) | GATC | Hpy23ORF1101P |
| 1101 | M | M.HpyJ013VIII (99% identity) | GATC | M.Hpy23ORF1101P |
| 1102 | alpha-1,2-fucosyltransferase | |||
| 1143 | haloacid dehalogenase-like hydrolase | |||
| ??? | M | M.HpyF221ORFRP (100% identity) | CATG | M.Hpy23ORF1144P |
| 1145 | iceA2 protein | |||
| 1308 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1309 | M | M.HpyOK88ORFCP (100% identity) | GAATTC | M.Hpy23ORF1309P |
| 1310 | R | Hpy154ORF7055P (100% identity) | GAATTC | Hpy23ORF1309P |
| 1311 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1363 | DNA polymerase I | |||
| 1364 | S | S.Hpy35ORF20067P (44% identity) | S1.Hpy23ORF1366P | |
| 1365 | S | S.HpyPF16ORF6895P (48% identity) | S2.Hpy23ORF1366P | |
| ??? | RM | HpyMA08ORF6810P (96% identity) | Hpy23ORF1366P | |
| 1368 | transformation associated protein | |||
| 1409 | uncharacterized protein | |||
| 1410 | RM | HpyHP32ORF6985P (91% identity) | Hpy23ORF1410P | |
| 1411 | type III restriction enzyme R protein | |||
| 1446 | uncharacterized protein | |||
| 1447 | M | M.HpyP90ORFTP (100% identity) | TGCA | M.Hpy23ORF1447P |
| 1448 | R | HpyOK303ORFIP (99% identity) | TGCA | Hpy23ORF1447P |
| 1449 | site-specific DNA-methyltransferase | |||
| 1448 | type II restriction enzyme | |||
| 1449 | M | M.HpyOK88ORFIP (100% identity) | M.Hpy23ORF1449P | |
| 1450 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1295 | endonuclease | |||
| 1296 | M | M.Hpy30ORF1273P (98% identity) | M.Hpy23ORF1296P | |
| 1297 | R | HpyF211ORF1314P (98% identity) | Hpy23ORF1296P | |
| 1298 | biotin synthase | |||
| 1410 | type IIS restriction enzyme R and M protein | |||
| 1411 | R | HpyPF16ORF7130P (98% identity) | Hpy23ORF1412P | |
| ??? | M | M.HpyQ59ORFWP (97% identity) | M.Hpy23ORF1412P | |
| 1414 | ATP-dependent DNA helicase RecG | |||