Helicobacter pylori F21 |
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Putative Helicobacter pylori F21 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,566,831 bp
GenBank #: AP017336
REBASE acronym: Hpy21
Org_num: 22610
All begin HPF21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 407 | integral membrane protein | |||
| 408 | M | M.HpyTW24ORF4295P (92% identity) | M.Hpy21ORF408P | |
| 409 | S | S2.Hpy21ORF469P (41% identity) | S1.Hpy21ORF408P | |
| 410 | S | S.HpyOki112ORF2775P (95% identity) | S2.Hpy21ORF408P | |
| 411 | R | HpyP30ORFTP (98% identity) | Hpy21ORF408P | |
| 412 | hydroxyethylthiazole kinase | |||
| 468 | cadmium-transporting ATPase, P-type | |||
| 469 | S | S2.Hpy21ORF469P (41% identity) | S1.Hpy21ORF469P | |
| 470 | S | S.Hpyfe39ORF3335P (95% identity) | S2.Hpy21ORF469P | |
| 471 | outer membrane protein HofF | |||
| 795 | uncharacterized protein | |||
| ??? | R | HpyG272ORF5090P (94% identity) | Hpy21ORF798P | |
| 798 | M | M.Hpy63ORF467P (89% identity) | M.Hpy21ORF798P | |
| 799 | S | S.HpyF216ORFNP (99% identity) | S.Hpy21ORF798P | |
| 800 | polyphosphate kinase | |||
| 1447 | FAD-dependent thymidylate synthase | |||
| 1448 | S | S.HpyK119ORF7290P (96% identity) | S.Hpy21ORF1450P | |
| 1449 | uncharacterized protein | |||
| 1450 | M | M.HpyP88ORFOP (99% identity) | M.Hpy21ORF1450P | |
| ??? | R | Hpy17ORF1438P (97% identity) | Hpy21ORF1450P | |
| 1453 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 47 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyCA1ORF6600P (90% identity) | Hpy21ORF48P | |
| ??? | hypothetical protein | |||
| ??? | hypothetical protein | |||
| ??? | M | M.Hpyfe83ORF6875P (99% identity) | GANTC | M.Hpy21ORF50P |
| 53 | R | HpyF227ORFFP (99% identity) | GANTC | Hpy21ORF50P |
| 54 | protease | |||
| 62 | uncharacterized protein | |||
| 63 | M | M2.HpyF227ORFWP (98% identity) | CCTC | M1.Hpy21ORF63P |
| 64 | M | M2.HpyJ026VIP (94% identity) | CCTC | M2.Hpy21ORF63P |
| 65 | sodium/proline symporter | |||
| 185 | flgM protein | |||
| 186 | M | M.HpyK009XIII (99% identity) | GCGC | M.Hpy21ORF186P |
| 187 | uncharacterized protein | |||
| 220 | laminin subunit alpha-2 precursor | |||
| 221 | R | Hpy83ORF1099P (100% identity) | TCNNGA | Hpy21ORF222P |
| 222 | M | M.Hpyfe82ORF2040P (99% identity) | TCNNGA | M.Hpy21ORF222P |
| 223 | biotin carboxylase | |||
| 354 | rep helicase, single-stranded DNA-dependent | |||
| 355 | M | M.Hpy53ORFPP (98% identity) | GTNNAC | M.Hpy21ORF355P |
| 356 | R | HpyTW04XIP (100% identity) | Hpy21ORF355P | |
| 357 | flagellar hook protein FlgE | |||
| 589 | uncharacterized protein | |||
| ??? | RM | HpyHP37ORF3510P (71% identity) | Hpy21ORF590P | |
| 594 | glycerol-3-phosphate dehydrogenase | |||
| 752 | m23/M37 family peptidase | |||
| 753 | R | Hpy17ORF391P (100% identity) | Hpy21ORF754P | |
| 754 | M | M.Hpy17ORF391P (99% identity) | GTAC | M.Hpy21ORF754P |
| 755 | DNA gyrase subunit B | |||
| 773 | uncharacterized protein | |||
| 774 | R | HpyK51ORF455P (97% identity) | ACNGT | Hpy21ORF775P |
| ??? | M | M.HpyP98ORFXP (98% identity) | ACNGT | M.Hpy21ORF775P |
| 777 | GTP-binding protein TypA/BipA | |||
| 778 | type II adenine specific methyltransferase | |||
| 779 | M | M.HpyJ021III (98% identity) | ATTAAT | M.Hpy21ORF779P |
| 780 | outer membrane protein | |||
| 882 | uncharacterized protein | |||
| ??? | M | M.Hpyoh1ORF4535P (99% identity) | M.Hpy21ORF883P | |
| 885 | GTP-binding protein LepA | |||
| 921 | uncharacterized protein | |||
| 922 | M | M.Hpy17ORF915P (99% identity) | CTNAG | M.Hpy21ORF922P |
| ??? | R | Hpy17ORF915P (100% identity) | Hpy21ORF922P | |
| 925 | polysaccharide deacetylase family protein | |||
| 973 | ATP-dependent protease binding subunit | |||
| 974 | M | M.Hpy898ORF1620P (99% identity) | CCGG | M.Hpy21ORF974P |
| 975 | R | Hpy24ORF291P (72% identity) | Hpy21ORF974P | |
| 976 | uncharacterized protein | |||
| 976 | uncharacterized protein | |||
| 977 | M | M.Hpy17ORF971P (100% identity) | TCGA | M.Hpy21ORF977P |
| 978 | exodeoxyribonuclease VII large subunit | |||
| 1113 | 53 aa hypothetical protein | |||
| 1114 | R | HpyMKM5ORF107P (95% identity) | Hpy21ORF1115P | |
| 1115 | M | M.HpyJ013VIII (98% identity) | GATC | M.Hpy21ORF1115P |
| 1116 | alpha-1,2-fucosyltransferase | |||
| 1157 | haloacid dehalogenase-like hydrolase | |||
| 1158 | M | M.HpyJ021I (100% identity) | CATG | M.Hpy21ORF1158P |
| ??? | R | HpyJ015IP (95% identity) | CATG | Hpy21ORF1158P |
| 1161 | serine O-acetyltransferase | |||
| 1324 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1325 | R | HpyJA109ORF6630P (99% identity) | CGCG | Hpy21ORF1326P |
| 1326 | M | M.HpyK25ORF5225P (100% identity) | CGCG | M.Hpy21ORF1326P |
| 1327 | uncharacterized protein | |||
| 1381 | DNA polymerase I | |||
| 1382 | S | S.HpyBR12ORF6855P (66% identity) | S.Hpy21ORF1383P | |
| 1383 | M | M.Hpy78ORF1441P (100% identity) | M.Hpy21ORF1383P | |
| 1384 | R | HpyJ016ORF7060P (100% identity) | Hpy21ORF1383P | |
| 1385 | restriction enzyme BcgI alpha chain-like | |||
| 1411 | permease; membrane protein | |||
| 1412 | M | M1.Hpy17ORF1399P (99% identity) | CCATC | M1.Hpy21ORF1412P |
| 1413 | M | DNA adenine methylase | CCATC | M2.Hpy21ORF1412P |
| ??? | R | HpyP96ORFYP (95% identity) | CCATC | Hpy21ORF1412P |
| 1416 | outer membrane protein | |||
| 1429 | transcription elongation factor NusA | |||
| ??? | RM | Hpyfe58ORF60P (88% identity) | Hpy21ORF1430P | |
| 1432 | uncharacterized protein | |||
| 1471 | type II methylase protein | |||
| 1472 | M | type II methylase protein | TGCA | M.Hpy21ORF1471P |
| 1473 | R | HpyK111XP (93% identity) | TGCA | Hpy21ORF1471P |
| 1474 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| ??? | R | Hpy78ORF39P (94% identity) | Hpy21ORF36P | |
| 36 | M | M.Hpy17ORF34P (99% identity) | M.Hpy21ORF36P | |
| 37 | transcriptional regulator | |||
| 1309 | endonuclease | |||
| ??? | M | M.HpyJF13ORF1336P (98% identity) | M.Hpy21ORF1310P | |
| 1312 | R | Hpyfe8ORF20P (88% identity) | Hpy21ORF1310P | |
| 1313 | biotin synthase | |||
| 1434 | uncharacterized protein | |||
| 1435 | R | HpyMKF3ORF1447P (98% identity) | Hpy21ORF1436P | |
| ??? | M | M.HpyK050ORF7255P (96% identity) | M.Hpy21ORF1436P | |
| 1438 | ATP-dependent DNA helicase RecG | |||