Helicobacter pylori F209 |
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Putative Helicobacter pylori F209 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,582,399 bp
GenBank #: AP017332
REBASE acronym: HpyF209
Org_num: 22568
All begin HPF209_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 465 | polyphosphate kinase | |||
| 466 | S | S.Hpy83ORF499P (99% identity) | S.HpyF209ORF467P | |
| 467 | M | M.Hpy23ORF787P (97% identity) | M.HpyF209ORF467P | |
| ??? | R | Hpy673ORF2300P (95% identity) | HpyF209ORF467P | |
| 470 | uncharacterized protein | |||
| 520 | modification methylase HaeIII | |||
| 521 | M | M.HpyTN2ORF5590P (96% identity) | M.HpyF209ORF521P | |
| ??? | S | S.HpyF209ORF582P (98% identity) | S.HpyF209ORF521P | |
| 524 | R | HpyF94ORF400P (84% identity) | HpyF209ORF521P | |
| 525 | hydroxyethylthiazole kinase | |||
| 581 | cadmium-transporting ATPase, P-type | |||
| ??? | S | S.HpyF209ORF521P (98% identity) | S.HpyF209ORF582P | |
| 584 | outer membrane protein HofF | |||
| 1337 | 64 aa hypothetical protein | |||
| 1338 | S | S.Hpy225ORF1484P (95% identity) | S.HpyF209ORF1338P | |
| 1339 | formyltetrahydrofolate hydrolase | |||
| 1440 | FAD-dependent thymidylate synthase | |||
| 1441 | S | S.HpyMKM1ORF1442P (96% identity) | S.HpyF209ORF1442P | |
| ??? | M | M.HpyOK303ORFHP (97% identity) | M.HpyF209ORF1442P | |
| ??? | R | HpySW26ORF7465P (89% identity) | HpyF209ORF1442P | |
| 1448 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 47 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyK51ORF46P (87% identity) | HpyF209ORF48P | |
| 48 | adenine-specific DNA methyltransferase | |||
| 48 | adenine-specific DNA methyltransferase | |||
| 50 | M | M.HpyOK06ORFKP (99% identity) | GANTC | M.HpyF209ORF50P |
| 51 | R | HpyK050VIP (98% identity) | GANTC | HpyF209ORF50P |
| 52 | protease | |||
| 59 | terC family integral membrane protein | |||
| 60 | M | M1.Hpy5ORF1530P (100% identity) | CCTC | M1.HpyF209ORF60P |
| 61 | M | M2.HpyK035IVP (99% identity) | CCTC | M2.HpyF209ORF60P |
| 62 | R | HpyF20JORF60P (100% identity) | CCTC | HpyF209ORF60P |
| 63 | type II R-M system restriction endonuclease | |||
| 62 | restriction endonuclease | |||
| 63 | R | HpyF226ORFIP (99% identity) | CCTTC | HpyF209ORF64P |
| 64 | M | M.HpyF226ORFIP (99% identity) | CCTTC | M.HpyF209ORF64P |
| 65 | sodium/proline symporter | |||
| 153 | alpha-1,2-fucosyltransferase | |||
| 154 | M | M.Hpyfe5ORF6755P (99% identity) | GATC | M.HpyF209ORF154P |
| 155 | R | HpyJ002XIIP (97% identity) | GATC | HpyF209ORF154P |
| 156 | malonyl coenzyme A-acyl carrier protein | |||
| 214 | elongation factor P | |||
| 215 | R | R1.Hpyfe93ORF6315P (99% identity) | R1.HpyF209ORF215P | |
| 216 | R | R2.HpyJA114ORF950P (93% identity) | R2.HpyF209ORF215P | |
| 217 | sialic acid synthase | |||
| 298 | exodeoxyribonuclease VII large subunit | |||
| 299 | R | Hpy63ORF294P (99% identity) | CCGG | HpyF209ORF300P |
| 300 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.HpyF209ORF300P |
| 301 | ATP-dependent protease binding subunit | |||
| 481 | outer membrane protein | |||
| 482 | M | M.Hpyfe127ORF4890P (98% identity) | ATTAAT | M.HpyF209ORF482P |
| 483 | type II adenine specific methyltransferase | |||
| 484 | GTP-binding protein TypA | |||
| 485 | M | M.HpyP88ORFVP (99% identity) | ACNGT | M.HpyF209ORF485P |
| 486 | R | Hpyfe1ORF4990P (99% identity) | ACNGT | HpyF209ORF485P |
| 487 | DNA cytosine methyltransferase | |||
| 486 | type II restriction endonuclease | |||
| 487 | M | M.Hpyfe63ORF4765P (98% identity) | ACGT | M.HpyF209ORF487P |
| 488 | R | HpySG19ORF2465P (99% identity) | ACGT | HpyF209ORF487P |
| 489 | catalase-like protein | |||
| 518 | phosphatidic acid phosphatase | |||
| 519 | R | HpyTN2ORF5580P (100% identity) | GGCC | HpyF209ORF520P |
| 520 | M | M.HpyTN2ORF5580P (100% identity) | GGCC | M.HpyF209ORF520P |
| 521 | type I restriction-modification system, M | |||
| 688 | glycerol-3-phosphate dehydrogenase | |||
| 689 | RM | HpyOki128ORF3185P (15% identity) | HpyF209ORF689AP | |
| 690 | RM | Hpyfe58ORF4040P (62% identity) | HpyF209ORF689BP | |
| 691 | RM | type IIG restriction-modification enzyme | HpyF209ORF689CP | |
| 692 | outer membrane protein | |||
| 863 | m23/M37 family peptidase | |||
| 864 | R | HpyJ012VIP (99% identity) | GTAC | HpyF209ORF865P |
| 865 | M | M.HpyM5CORFYP (97% identity) | GTAC | M.HpyF209ORF865P |
| 866 | DNA gyrase subunit B | |||
| 903 | flagellar hook protein FlgE | |||
| 904 | R | Hpyfe13ORF2880P (98% identity) | GTNNAC | HpyF209ORF905P |
| 905 | M | M.Hpy51ORF850P (98% identity) | GTNNAC | M.HpyF209ORF905P |
| 906 | rep helicase, single-stranded DNA-dependent | |||
| 1036 | biotin carboxylase | |||
| 1037 | M | M.HpyP98ORFEP (100% identity) | TCNNGA | M.HpyF209ORF1037P |
| 1038 | R | Hpyfe37ORF2030P (99% identity) | TCNNGA | HpyF209ORF1037P |
| 1039 | laminin subunit alpha-2 precursor | |||
| 1070 | uncharacterized protein | |||
| 1071 | M | M.HpyMA22XII (99% identity) | GCGC | M.HpyF209ORF1071P |
| 1072 | negative regulator of flagellin synthesis FlgM | |||
| 1156 | haloacid dehalogenase-like hydrolase | |||
| 1157 | M | M.HpyK28I (97% identity) | CATG | M.HpyF209ORF1157P |
| ??? | R | Hpy70ORF1167P (100% identity) | CATG | HpyF209ORF1157P |
| 1160 | serine O-acetyltransferase | |||
| 1375 | DNA polymerase I | |||
| 1376 | S | S.Hpy38ORF1425P (100% identity) | S.HpyF209ORF1377P | |
| ??? | RM | Hpy86ORF580P (97% identity) | HpyF209ORF1377P | |
| 1379 | hP1473-transformation associated protein | |||
| 1404 | permease; membrane protein | |||
| 1405 | M | M1.HpyF232ORFDP (99% identity) | CCATC | M1.HpyF209ORF1405P |
| 1406 | M | M2.HpyUM037VI (99% identity) | CCATC | M2.HpyF209ORF1405P |
| 1407 | R | HpyK001VIIIP (98% identity) | CCATC | HpyF209ORF1405P |
| 1408 | outer membrane protein | |||
| 1424 | uncharacterized protein | |||
| ??? | RM | HpyMKF3ORF1445P (91% identity) | HpyF209ORF1425P | |
| 1428 | type III restriction enzyme R protein | |||
| 1464 | uncharacterized protein | |||
| 1465 | M | M.HpyJP26I (100% identity) | TGCA | M.HpyF209ORF1465P |
| 1466 | R | HpyK041VP (98% identity) | TGCA | HpyF209ORF1465P |
| 1467 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 33 | rod shape-determining protein MreC | |||
| 34 | R | Hpyfe61ORF7130P (95% identity) | HpyF209ORF35P | |
| ??? | M | M.HpyOK317ORFHP (96% identity) | M.HpyF209ORF35P | |
| 37 | transcriptional regulator | |||
| 1308 | endonuclease | |||
| 1309 | M | M.HpyOK310ORFCP (97% identity) | M.HpyF209ORF1309P | |
| 1310 | R | HpyOK34ORFDP (88% identity) | HpyF209ORF1309P | |
| 1311 | biotin synthase | |||
| ??? | hypothetical protein | |||
| 1428 | R | HpyMKF3ORF1447P (98% identity) | HpyF209ORF1429P | |
| ??? | M | M.Hpybs2ORFD1P (96% identity) | M.HpyF209ORF1429P | |
| 1431 | ATP-dependent DNA helicase RecG | |||