Helicobacter pylori F18 |
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Putative Helicobacter pylori F18 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,607,914 bp
GenBank #: AP017331
REBASE acronym: HpyF18K
Org_num: 22567
All begin HPF18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 467 | polyphosphate kinase | |||
| 468 | S | S.HpyF226ORFPP (99% identity) | S.HpyF18KORF469P | |
| 469 | M | M.HpyPF16ORF2205P (96% identity) | M.HpyF18KORF469P | |
| ??? | R | HpyMKM1ORF464P (95% identity) | HpyF18KORF469P | |
| 472 | uncharacterized protein | |||
| 812 | outer membrane protein HofF | |||
| 813 | S | S1.HpyF18KORF875P (100% identity) | S.HpyF18KORF813P | |
| 814 | uncharacterized protein | |||
| 872 | hydroxyethylthiazole kinase | |||
| 873 | R | Hpy70ORF527P (98% identity) | HpyF18KORF875P | |
| 874 | S | S.HpyF18KORF813P (100% identity) | S1.HpyF18KORF875P | |
| ??? | S | S2.HpyMKM6ORF849P (99% identity) | S2.HpyF18KORF875P | |
| ??? | M | M.HpyK51ORF833P (92% identity) | M.HpyF18KORF875P | |
| 877 | integral membrane protein | |||
| 1472 | FAD-dependent thymidylate synthase | |||
| 1473 | S | S1.HpyGU83AORF14440P (98% identity) | S.HpyF18KORF1475P | |
| 1474 | uncharacterized protein | |||
| ??? | M | M.HpyF93ORFCP (97% identity) | M.HpyF18KORF1475P | |
| ??? | R | HpyF225ORFFP (98% identity) | HpyF18KORF1475P | |
| 1479 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpy5AEK1ORFLP (89% identity) | HpyF18KORF46P | |
| 47 | protease | |||
| 54 | terC family integral membrane protein | |||
| 55 | M | M1.HpyMKF10ORF103P (98% identity) | CCTC | M1.HpyF18KORF55P |
| 56 | M | M2.HpyP30ORFMP (79% identity) | CCTC | M2.HpyF18KORF55P |
| 57 | sodium/proline symporter | |||
| 145 | alpha-1,2-fucosyltransferase | |||
| 146 | R | M.HpyK112VIII (59% identity) | HpyF18KORF146P | |
| 147 | tetratricopeptide TPR_2 repeat protein | |||
| 203 | elongation factor P | |||
| ??? | M | M.Hpy63ORF202P (100% identity) | M.HpyF18KORF204P | |
| 207 | uncharacterized protein | |||
| 208 | type II restriction-modification system | |||
| 209 | type II restriction-modification system | |||
| 210 | R | R2.HpyK007ORF985P (90% identity) | HpyF18KORF204P | |
| 211 | sialic acid synthase | |||
| 292 | exodeoxyribonuclease VII large subunit | |||
| 293 | R | HpyJP26XIP (63% identity) | CCGG | HpyF18KORF294P |
| 294 | M | M.Hpy24ORF291P (99% identity) | CCGG | M.HpyF18KORF294P |
| 295 | ATP-dependent protease binding subunit | |||
| 344 | polysaccharide deacetylase family protein | |||
| 345 | R | Hpyfe5ORF5695P (99% identity) | HpyF18KORF346P | |
| 346 | M | M.Hpyfe59ORF5575P (100% identity) | M.HpyF18KORF346P | |
| 347 | uncharacterized protein | |||
| 488 | outer membrane protein HopK | |||
| 489 | M | M.Hpy78ORF494P (99% identity) | ATTAAT | M.HpyF18KORF489P |
| 490 | type II adenine specific methyltransferase | |||
| 491 | GTP-binding protein TypA | |||
| ??? | M | M.HpyTN2ORF5220P (100% identity) | ACNGT | M.HpyF18KORF492P |
| 494 | R | HpyF226ORFHP (100% identity) | ACNGT | HpyF18KORF492P |
| 495 | catalase-like protein | |||
| 511 | DNA gyrase subunit B | |||
| ??? | M | M.HpyFXII (99% identity) | GTAC | M.HpyF18KORF512P |
| 514 | R | Hpy673ORF2710P (63% identity) | GTAC | HpyF18KORF512P |
| 515 | m23/M37 family peptidase | |||
| 683 | polysaccharide biosynthesis protein | |||
| 684 | R | HpyTN2ORF7450P (99% identity) | GGNNCC | HpyF18KORF685P |
| 685 | M | M.HpyTN2ORF7450P (100% identity) | GGNNCC | M.HpyF18KORF685P |
| 686 | polysaccharide biosynthesis protein | |||
| 702 | outer membrane protein | |||
| ??? | RM | Hpy55ORF681P (86% identity) | HpyF18KORF703P | |
| 708 | glycerol-3-phosphate dehydrogenase | |||
| 926 | flagellar hook protein FlgE | |||
| 927 | R | HpyF228ORFOP (97% identity) | GTNNAC | HpyF18KORF928P |
| 928 | M | M.HpyF94ORF346P (97% identity) | GTNNAC | M.HpyF18KORF928P |
| 929 | rep helicase, single-stranded DNA-dependent | |||
| 1065 | biotin carboxylase | |||
| 1066 | M | M.HpyOK318ORFEP (99% identity) | TCNNGA | M.HpyF18KORF1066P |
| 1067 | R | Hpy72ORF1040P (98% identity) | TCNNGA | HpyF18KORF1066P |
| 1068 | laminin subunit alpha-2 precursor | |||
| 1098 | uncharacterized protein | |||
| 1099 | M | M.Hpy271ORFE1P (99% identity) | GCGC | M.HpyF18KORF1099P |
| 1100 | flgM protein | |||
| 1186 | haloacid dehalogenase-like hydrolase | |||
| 1187 | M | M.HpyOK95ORFUP (99% identity) | CATG | M.HpyF18KORF1187P |
| 1188 | iceA2 protein | |||
| 1407 | 61 aa hypothetical protein | |||
| 1408 | S | S.HpyJ029ORF6945P (50% identity) | S.HpyF18KORF1409P | |
| 1409 | M | M.Hpyfe114ORF270P (100% identity) | GGNCC | M.HpyF18KORF1409P |
| 1410 | R | Hpyfe110ORF290P (99% identity) | GGNCC | HpyF18KORF1409P |
| 1411 | restriction enzyme BcgI alpha chain-like | |||
| 1438 | permease; membrane protein | |||
| 1439 | M | M1.HpyU123V (100% identity) | CCATC | M1.HpyF18KORF1439P |
| 1440 | M | M2.HpyK27II (99% identity) | CCATC | M2.HpyF18KORF1439P |
| ??? | R | HpyP96ORFYP (99% identity) | CCATC | HpyF18KORF1439P |
| 1443 | outer membrane protein | |||
| 1459 | uncharacterized protein | |||
| 1460 | RM | HpyJ022ORF7110P (95% identity) | HpyF18KORF1460P | |
| 1461 | type III restriction enzyme R protein | |||
| 1495 | uncharacterized protein | |||
| 1496 | M | M.HpyJP26I (99% identity) | TGCA | M.HpyF18KORF1496P |
| 1497 | R | HpyJA101ORF7310P (98% identity) | TGCA | HpyF18KORF1496P |
| 1498 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | M | M.HpyJ029ORF200P (54% identity) | M.HpyF18KORF33P | |
| 34 | transcriptional regulator | |||
| 1337 | endonuclease | |||
| 1338 | M | M.Hpy63ORF1311P (97% identity) | M.HpyF18KORF1338P | |
| 1339 | R | Hpy63ORF1311P (97% identity) | HpyF18KORF1338P | |
| 1340 | biotin synthase | |||
| 1460 | type IIS restriction enzyme R and M protein | |||
| 1461 | R | HpyPF16ORF7130P (98% identity) | HpyF18KORF1462P | |
| 1462 | M | M.HpyK93ORF40P (96% identity) | M.HpyF18KORF1462P | |
| 1463 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 207 | uncharacterized protein | |||
| 208 | R | Hpy63McrBP (100% identity) | HpyF18KMcrBP | |
| 210 | type II restriction enzyme | |||