Helicobacter pylori F13 |
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Putative Helicobacter pylori F13 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 6869
Complete sequence: 1,591,903 bp
GenBank #: AP017329
REBASE acronym: HpyJF13
Org_num: 3190
All begin HPF13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 465 | polyphosphate kinase | |||
| 466 | S | S.HpyF004ORF2125P (98% identity) | S.HpyJF13ORF467P | |
| 467 | M | M.HpyPF16ORF2205P (97% identity) | M.HpyJF13ORF467P | |
| 468 | R | HpyF211ORF459P (79% identity) | HpyJF13ORF467P | |
| 468 | type I restriction enzyme R protein | |||
| 525 | integral membrane protein | |||
| 526 | M | M.HpyPF57IX (99% identity) | M.HpyJF13ORF526P | |
| 527 | S | type I R-M system S protein | S.HpyJF13ORF526P | |
| 528 | R | HpyGU83AORFSP (96% identity) | HpyJF13ORF526P | |
| 529 | hydroxyethylthiazole kinase | |||
| 586 | cadmium-transporting ATPase, P-type | |||
| 587 | S | S.HpyJA111XI (96% identity) | S.HpyJF13ORF587P | |
| 588 | outer membrane protein HofF | |||
| 1460 | FAD-dependent thymidylate synthase | |||
| 1461 | S | S.Hpy67ORF1459P (98% identity) | S.HpyJF13ORF1463P | |
| 1462 | uncharacterized protein | |||
| 1463 | M | M.HpyF211ORF1443P (99% identity) | M.HpyJF13ORF1463P | |
| 1464 | R | Hpy90ORF1463P (98% identity) | HpyJF13ORF1463P | |
| 1465 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyUM111ORF1560P (85% identity) | HpyJF13ORF47P | |
| 49 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 49 | M | M.Hpyfe83ORF6875P (99% identity) | GANTC | M.HpyJF13ORF49P |
| 50 | R | HpyK93ORF7050P (96% identity) | GANTC | HpyJF13ORF49P |
| 51 | protease | |||
| 58 | terC family integral membrane protein | |||
| 59 | M | M1.HpyF209ORF60P (97% identity) | CCTC | M1.HpyJF13ORF59P |
| 60 | M | M2.HpyK033IVP (99% identity) | CCTC | M2.HpyJF13ORF59P |
| 61 | R | HpyF20JORF60P (98% identity) | CCTC | HpyJF13ORF59P |
| 62 | uncharacterized protein | |||
| 62 | uncharacterized protein | |||
| 63 | M | M.HpyF233ORFJP (99% identity) | GTSAC | M.HpyJF13ORF63P |
| ??? | R | Hpyfe63ORF7595P (100% identity) | GTSAC | HpyJF13ORF63P |
| 65 | adenine/cytosine DNA methyltransferase | |||
| 147 | alpha-1,2-fucosyltransferase | |||
| 148 | M | M.HpyK025VIII (97% identity) | M.HpyJF13ORF148P | |
| ??? | R | Hpy90ORF153P (100% identity) | HpyJF13ORF148P | |
| 151 | tetratricopeptide TPR_2 repeat protein | |||
| 287 | exodeoxyribonuclease VII large subunit | |||
| 288 | M | M.Hpy21ORF977P (99% identity) | TCGA | M.HpyJF13ORF288P |
| 289 | uncharacterized protein | |||
| 289 | uncharacterized protein | |||
| 290 | R | Hpyfe16ORF2285P (71% identity) | HpyJF13ORF291P | |
| ??? | M | M.HpyJ021ORF1415P (98% identity) | M.HpyJF13ORF291P | |
| 293 | ATP-dependent protease binding subunit | |||
| 340 | polysaccharide deacetylase family protein | |||
| 341 | R | HpyJ015VIIP (99% identity) | HpyJF13ORF342P | |
| 342 | M | M.HpyF211ORF337P (100% identity) | M.HpyJF13ORF342P | |
| 343 | uncharacterized protein | |||
| 486 | outer membrane protein HopK | |||
| 487 | M | M.Hpyfe57ORF4920P (98% identity) | M.HpyJF13ORF487P | |
| 488 | DD-heptosyltransferase | |||
| 489 | GTP-binding protein TypA | |||
| 490 | M | M.HpyF233ORFDP (100% identity) | M.HpyJF13ORF490P | |
| ??? | R | HpyF233ORFDP (71% identity) | HpyJF13ORF490P | |
| 493 | catalase-like protein | |||
| 719 | outer membrane protein | |||
| ??? | RM | HpyJ010ORF2855P (67% identity) | HpyJF13ORF720P | |
| 723 | helicase domain-containing protein | |||
| 928 | flagellar hook protein FlgE | |||
| 929 | R | HpyF227ORFMP (98% identity) | HpyJF13ORF930P | |
| 930 | M | M.Hpyfe15ORF2730P (97% identity) | M.HpyJF13ORF930P | |
| 931 | rep helicase, single-stranded DNA-dependent | |||
| 1064 | biotin carboxylase | |||
| ??? | M | M.HpyUM065ORF7600P (100% identity) | M.HpyJF13ORF1065P | |
| 1066 | R | Hpyfe85ORF2060P (100% identity) | HpyJF13ORF1065P | |
| 1067 | laminin subunit alpha-2 precursor | |||
| 1096 | uncharacterized protein | |||
| 1097 | M | M.HpyMKM5ORF1090P (98% identity) | M.HpyJF13ORF1097P | |
| 1098 | flgM protein | |||
| 1180 | haloacid dehalogenase | |||
| 1181 | M | M.HpyPF16I (99% identity) | CATG | M.HpyJF13ORF1181P |
| ??? | R | HpyJF84ORFAP (77% identity) | CATG | HpyJF13ORF1181P |
| 1184 | serine O-acetyltransferase | |||
| 1348 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1349 | R | HpyF233ORFWP (100% identity) | HpyJF13ORF1350P | |
| 1350 | M | M.HpyMKM1ORF1324P (100% identity) | M.HpyJF13ORF1350P | |
| 1351 | uncharacterized protein | |||
| 1402 | DNA polymerase I | |||
| 1403 | S | S.HpyK115ORF6855P (63% identity) | S.HpyJF13ORF1404P | |
| 1404 | RM | HpyF235ORFWP (100% identity) | HpyJF13ORF1404P | |
| 1405 | competence protein ComFC | |||
| 1445 | transcription elongation factor NusA | |||
| 1446 | RM | HpyF94ORF1416P (92% identity) | HpyJF13ORF1446P | |
| 1447 | uncharacterized protein | |||
| 1482 | uncharacterized protein | |||
| 1483 | M | M.Hpyfe12ORF7635P (99% identity) | M.HpyJF13ORF1483P | |
| 1484 | R | HpyMA08IIP (99% identity) | HpyJF13ORF1483P | |
| 1485 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | R | HpyF226ORFKP (95% identity) | HpyJF13ORF34P | |
| ??? | M | M.HpyF235ORFEP (80% identity) | M.HpyJF13ORF34P | |
| 36 | transcriptional regulator | |||
| 1335 | endonuclease | |||
| 1336 | M | M.Hpy21ORF1310P (98% identity) | M.HpyJF13ORF1336P | |
| 1337 | R | HpyK93ORF660P (92% identity) | HpyJF13ORF1336P | |
| 1338 | biotin synthase | |||
| 1447 | uncharacterized protein | |||
| 1448 | R | HpyOK306ORFJP (97% identity) | HpyJF13ORF1449P | |
| 1449 | M | M.HpyP90ORFRP (97% identity) | M.HpyJF13ORF1449P | |
| 1450 | ATP-dependent DNA helicase RecG | |||