Vibrio harveyi |
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Putative Vibrio harveyi RM systems
Ref: Tu,Z. et al. unpublished
REBASE ref # 23672
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,560,044 bp | CP018680 |
| chromosome 2: | 2,260,627 bp | CP018681 |
| plasmid p2: | 76,744 bp | CP018683 |
| plasmid p3: | 59,857 bp | CP018684 |
REBASE acronym: Vha520
Org_num: 22479
All begin BG259_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 12715 | metal-dependent hydrolase | |||
| 12720 | R | Vpa120IIP (99% identity) | Vha520ORF12735P | |
| 12725 | S | S.LspSJ36ORF445P (56% identity) | S.Vha520ORF12735P | |
| 12730 | DNA damage-inducible protein D | |||
| 12735 | M | M.SspIB870ORF6510P (98% identity) | M.Vha520ORF12735P | |
| 12740 | 76 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 235 | transporter | |||
| ??? | M | M.Vhafi2ORFAP (100% identity) | GGCC | M.Vha520ORF240P |
| 245 | 441 aa hypothetical protein | |||
| 6850 | 423 aa hypothetical protein | |||
| 6855 | R | Vha2145ORF11490P (98% identity) | GGCC | Vha520ORF6855P |
| 6860 | macrolide ABC transporter ATP-binding protein | |||
| 7610 | 383 aa hypothetical protein | |||
| 7615 | R | Vhaf5ORFDP (99% identity) | Vha520ORF7620P | |
| 7620 | M | M.VhaVH5ORF19765P (100% identity) | RCCGGY | M.Vha520ORF7620P |
| 7625 | integrase | |||
| 10995 | ribulose-phosphate 3-epimerase | |||
| 11000 | M | M.Vsp43155DamP (100% identity) | GATC | M.Vha520DamP |
| 11005 | cell division protein DamX | |||
| plasmid p2 | ||||
| 28525 | addiction module toxin RelE | |||
| 28530 | M | M.Vru23124ORFDP (95% identity) | GAATTC | M.Vha520ORF28530P |
| 29040 | HNH endonuclease | |||
| plasmid p3 | ||||
| 28705 | RecX family transcriptional regulator | |||
| 28710 | M | M.PmeBin348ORFBP (54% identity) | CAGNNNNNNCTG | M.Vha520ORF28710P |
| 28715 | DNA helicase II | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 23120 | chromosome partitioning protein ParA | |||
| 23125 | R | Vhaf4ORFFP (74% identity) | Vha520McrAP | |
| 23130 | 66 aa hypothetical protein | |||