Gardnerella vaginalis JCP7719 |
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Putative Gardnerella vaginalis JCP7719 RM systems
Ref: Weinstock,G. et al. unpublished
REBASE ref # 22837
Contig set: 1,559,149 bp
GenBank #: ATJO00000000 (NZ_ATJO00000000)
REBASE acronym: Gva7719
Org_num: 21774
All begin HMPREF1576_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 955 | R | GvaB482ORF3726P (99% identity) | Gva7719ORF955P | |
| 956 | ABC transporter, substrate-binding protein | |||
| 402 | 41 aa hypothetical protein | |||
| 404 | R | GvaB482ORF6236P (98% identity) | Gva7719ORF406P | |
| 405 | S | S.GvaB473ORF1375P (65% identity) | S.Gva7719ORF406P | |
| 406 | M | M.Gva9231ORF162P (93% identity) | M.Gva7719ORF406P | |
| 407 | 290 aa hypothetical protein | |||
| 949 | toxin-antitoxin system, toxin component, HicA | |||
| 950 | M | M.GvaB477ORF6083P (100% identity) | M.Gva7719ORF950P | |
| 951 | S | S1.Gsp255II (50% identity) | S1.Gva7719ORF950P | |
| 952 | S | S3.Sru7747ORF5220P (34% identity) | S2.Gva7719ORF950P | |
| 953 | phage integrase, SAM-like domain protein | |||
| 954 | S | S3.PmeBin220ORFAP (41% identity) | S3.Gva7719ORF950P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 800 | R | Gsp1198PORF4005P (97% identity) | Gva7719ORF801P | |
| 801 | M | M.Gsp1198PORF4005P (81% identity) | GAATTC | M.Gva7719ORF801P |
| 802 | DNA binding domain, excisionase family | |||
| 56 | 226 aa hypothetical protein | |||
| 57 | M | M.Gsp127ORF4860P (99% identity) | M.Gva7719ORF57P | |
| 58 | 261 aa hypothetical protein | |||
| 79 | 550 aa hypothetical protein | |||
| 80 | C | C.Gva7659ORF187P (100% identity) | C.Gva7719ORF81P | |
| 81 | M | M.GvaAMDORF738P (100% identity) | CCTNAGG | M.Gva7719ORF81P |
| ??? | R | GvaAMDORF738P (100% identity) | CCTNAGG | Gva7719ORF81P |
| 83 | 66 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 968 | 345 aa hypothetical protein | |||
| 969 | M | M.GvaFY28ORF3965P (97% identity) | M.Gva7719ORF969P | |
| 970 | R | GvaFY28ORF3965P (100% identity) | Gva7719ORF969P | |
| 971 | 240 aa hypothetical protein | |||