Xylella fastidiosa 3124 |
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Putative Xylella fastidiosa 3124 RM systems
Ref: Pierry,P.M. et al. unpublished
REBASE ref # 23280
Complete sequence: 2,748,592 bp
GenBank #: CP009829
REBASE acronym: Xfa3124
Org_num: 21180
All begin XFC3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1245 | bifunctional aconitate hydratase | |||
| ??? | R | Xfa7AORF1240P (95% identity) | Xfa3124ORF1285P | |
| ??? | S | S.XfaXf32ORFAP (100% identity) | S.Xfa3124ORF1285P | |
| 1280 | N-6 DNA methylase | |||
| 1285 | M | type I restriction enzyme M protein | M.Xfa3124ORF1285P | |
| 1290 | 68 aa hypothetical protein | |||
| 12640 | M48 family metallopeptidase | |||
| 12645 | R | Xfa7AORF1240P (100% identity) | Xfa3124ORF12650P | |
| 1275 | S | S.XfaXf32ORFAP (100% identity) | S.Xfa3124ORF12650P | |
| 12650 | M | S.Xfa11399ORF1285P (58% identity) | M.Xfa3124ORF12650P | |
| 12655 | 48 aa hypothetical protein | |||
| 13285 | 104 aa hypothetical protein | |||
| 12255 | R | XfaXf32ORF12315P (99% identity) | Xfa3124ORF12265P | |
| 12260 | S | S.XfaXf32ORF12315P (100% identity) | S.Xfa3124ORF12265P | |
| ??? | M | M.XfaXf32ORF12315P (88% identity) | M.Xfa3124ORF12265P | |
| 13295 | restriction endonuclease subunit S | |||
| 13290 | HNH endonuclease | |||
| ??? | R | XfaXf32ORF12335P (96% identity) | Xfa3124ORF12285P | |
| 13295 | S | S2.XfaHib4ORF12655P (100% identity) | S2.Xfa3124ORF12285P | |
| 13300 | S | S.XfaXf32ORF12335P (46% identity) | S1.Xfa3124ORF12285P | |
| 12280 | 90 aa hypothetical protein | |||
| 12285 | M | M.XfaXf32ORF12335P (100% identity) | M.Xfa3124ORF12285P | |
| 12290 | LysE family translocator | |||
| 12340 | 108 aa hypothetical protein | |||
| 12345 | R | XfaXf32ORF12400P (100% identity) | Xfa3124ORF12360P | |
| 13315 | 210 aa hypothetical protein | |||
| 12355 | S | S.XfaXf32ORF12400P (100% identity) | S.Xfa3124ORF12360P | |
| 12360 | M | M.XfaXf32ORF12400P (100% identity) | M.Xfa3124ORF12360P | |
| 12365 | 137 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12750 | 68 aa hypothetical protein | |||
| 2410 | R | XfaXf32ORF2530P (100% identity) | CGTACG | Xfa3124ORF2415P |
| 2415 | M | M.XfaXf32ORF2530P (100% identity) | CGTACG | M.Xfa3124ORF2415P |
| 2425 | FKBP-type peptidyl-prolyl cis-trans isomerase | |||
| 3275 | lysozyme | |||
| 3280 | M | M.XfaORF2313P (100% identity) | M.Xfa3124ORF3280P | |
| 3285 | 76 aa hypothetical protein | |||
| 3350 | low molecular weight phosphotyrosine protein | |||
| 3355 | M | M.XfaPr8ORF3585P (100% identity) | M.Xfa3124ORF3355P | |
| 3360 | 71 aa hypothetical protein | |||
| 4100 | lysozyme | |||
| 4105 | M | M.XfaXf32ORF4255P (100% identity) | M.Xfa3124ORFAP | |
| 4110 | 232 aa hypothetical protein | |||
| 13040 | 47 aa hypothetical protein | |||
| 6100 | M | M.XfaXf6cORF5915P (100% identity) | GCATGC | M.Xfa3124ORF6100P |
| 6105 | Ax21 family protein | |||
| 6240 | DNA topoisomerase III | |||
| 6245 | M | M.XfaPr8ORF5690AP (100% identity) | M.Xfa3124ORF6245AP | |
| 6250 | group II intron reverse transcriptase/maturase | |||
| 6255 | M | M.Xfa3124ORF6255P (100% identity) | M.Xfa3124ORF6245BP | |
| 6260 | 185 aa hypothetical protein | |||
| 6250 | pseudogene | |||
| 6255 | M | M.Xfa3124ORF6245BP (100% identity) | M.Xfa3124ORF6255P | |
| 6260 | 185 aa hypothetical protein | |||
| 10310 | outer membrane protein assembly factor BamD | |||
| 10315 | R | XfaPr8ORF9980P (100% identity) | Xfa3124ORF10320P | |
| 10320 | M | M.XfaXf6cORF10320P (100% identity) | M.Xfa3124ORF10320P | |
| 10325 | 83 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4965 | 3-oxoacyl-ACP synthase III | |||
| 4970 | M | M.XfaXf32ORF5190P (100% identity) | M.Xfa3124ORF4970P | |
| 4975 | R | XfaXf32ORF5190P (100% identity) | Xfa3124ORF4970P | |
| 4980 | alpha/beta fold hydrolase | |||