Xylella fastidiosa J1a12 |
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Putative Xylella fastidiosa J1a12 RM systems
Ref: Pierry,P.M. and da Silva,P.I.P. unpublished
REBASE ref # 23278
Complete sequence: 2,788,789 bp
GenBank #: CP009823
REBASE acronym: Xfa12
Org_num: 21178
All begin OY18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1245 | metal-dependent hydrolase | |||
| ??? | R | Xfa11399ORF1285P (100% identity) | Xfa12ORF1280P | |
| 1265 | pseudogene | |||
| 1270 | S | S.Xfa11399ORF1285P (41% identity) | S.Xfa12ORF1280P | |
| 1275 | N-6 DNA methylase | |||
| 1280 | M | type I restriction enzyme M protein | M.Xfa12ORF1280P | |
| 1285 | 68 aa hypothetical protein | |||
| 12555 | pseudogene | |||
| 12560 | R | Xfa11399ORF11620P (100% identity) | Xfa12ORF12570P | |
| 12565 | S | S.XfaXf32ORF12315P (99% identity) | S.Xfa12ORF12570P | |
| 12570 | M | M.Xfa11399ORF11635P (100% identity) | M.Xfa12ORF12570P | |
| 12575 | pseudogene | |||
| 12575 | pseudogene | |||
| 12580 | R | Xfa11399ORF11645P (100% identity) | Xfa12ORF12595P | |
| 12585 | S | S.XfaFORF11220P (62% identity) | S.Xfa12ORF12595P | |
| 12590 | pseudogene | |||
| 12595 | M | M.Xfa11399ORF11655P (100% identity) | M.Xfa12ORF12595P | |
| 12600 | threonine transporter RhtB | |||
| 12635 | 66 aa hypothetical protein | |||
| 12640 | R | Xfa11399ORF11715P (100% identity) | Xfa12ORF12655P | |
| 12645 | 206 aa hypothetical protein | |||
| ??? | S | S.XfaORF2742P (100% identity) | S.Xfa12ORF12655P | |
| 12655 | M | M.Xfa4ORF11395P (100% identity) | M.Xfa12ORF12655P | |
| 12660 | 84 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2645 | 80 aa hypothetical protein | |||
| 2650 | R | XfaY3CORF8005P (100% identity) | CGTACG | Xfa12ORF2655P |
| 2655 | M | M.XfaXf6cORF2780P (100% identity) | CGTACG | M.Xfa12ORF2655P |
| 2665 | peptidylprolyl isomerase | |||
| 3500 | peptidase | |||
| 3505 | M | M.Xfa11399ORF9855P (99% identity) | M.Xfa12ORF3505P | |
| 3510 | pseudogene | |||
| 3570 | phosphotyrosine protein phosphatase | |||
| 3575 | M | M.Xfa11399ORF9785P (100% identity) | M.Xfa12ORF3575P | |
| 3580 | 470 aa hypothetical protein | |||
| 6780 | competence protein | |||
| 6785 | R | Xfa11399ORF3975P (100% identity) | Xfa12ORF6790P | |
| 6790 | M | M.XfaXf6cORF10320P (100% identity) | M.Xfa12ORF6790P | |
| 6795 | 83 aa hypothetical protein | |||
| 8465 | 185 aa hypothetical protein | |||
| ??? | M | M.XfaXf6cORF6085P (100% identity) | M.Xfa12ORF8470P | |
| 8475 | pseudogene | |||
| 8620 | 190 aa hypothetical protein | |||
| 8625 | M | M.XfaXf6cORF5915P (94% identity) | GCATGC | M.Xfa12ORF8625P |
| 8630 | pseudogene | |||
| 9055 | 231 aa hypothetical protein | |||
| 9060 | M | M.XfaSyVAORF2398P (99% identity) | M.Xfa12ORF9060P | |
| 9065 | 298 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9970 | 3-oxoacyl-ACP synthase | |||
| 9975 | M | M.XfaHib4ORF5525P (100% identity) | M.Xfa12ORF9975P | |
| 9980 | R | Xfa11399ORF8345P (100% identity) | Xfa12ORF9975P | |
| 9985 | alpha/beta hydrolase | |||