Vibrio cholerae NCTC9420 |
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Putative Vibrio cholerae NCTC9420 RM systems
Ref: Hu,D. et al. Proc. Natl. Acad. Sci. U.S.A. (2016) In press
REBASE ref # 23207
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,008,486 bp | CP013319 |
| chromosome 2: | 1,068,097 bp | CP013320 |
REBASE acronym: Vch9420
Org_num: 21062
All begin ASZ86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1783 | 706 aa hypothetical protein | |||
| 1784 | R | type I restriction enzyme HsdR | Vch9420ORF1791BP | |
| 1785 | transposase OrfAB, subunit A | |||
| 1786 | transposase | |||
| 1787 | R | VspNIH41ORF1746P (74% identity) | Vch9420ORF1791AP | |
| 1788 | 663 aa hypothetical protein | |||
| 1789 | 470 aa hypothetical protein | |||
| ??? | S | S.VchV52ORF8545P (100% identity) | S.Vch9420ORF1791P | |
| 1791 | M | M.VspNIH41ORF1746P (100% identity) | M.Vch9420ORF1791P | |
| 1792 | 687 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 249 | DNA repair protein RadC-related protein | |||
| 250 | M | M.Aba1120ORFAP (62% identity) | GCSGC | M.Vch9420ORF250P |
| 251 | R | Vsu21480ORFCP (31% identity) | R1.Vch9420ORF250P | |
| 252 | R | R1.SspOM32ORF805P (55% identity) | R2.Vch9420ORF250P | |
| 253 | integrase | |||
| 2083 | 67 aa hypothetical protein | |||
| 2084 | M | M.Vch5395ORF2020P (100% identity) | M.Vch9420ORF2084P | |
| 2085 | 115 aa hypothetical protein | |||
| 2680 | ribulose-phosphate 3-epimerase | |||
| 2681 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch9420DamP |
| 2682 | DamX-like protein | |||
| chromosome 2 | ||||
| 3029 | GMP reductase | |||
| ??? | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.Vch9420ORF3030P |
| 3031 | 638 aa hypothetical protein | |||
| 3268 | 82 aa hypothetical protein | |||
| 3269 | M | M.VspNIH41ORF3529P (94% identity) | M.Vch9420ORF3269P | |
| 3270 | 44 aa hypothetical protein | |||