Salmonella enterica subsp. enterica serovar Newport CFSAN003890 |
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Putative Salmonella enterica subsp. enterica serovar Newport CFSAN003890 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 23154
Complete sequence: 4,898,059 bp
GenBank #: CP016012
REBASE acronym: Sen3890
Org_num: 20865
All begin A8181_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20360 | 322 aa hypothetical protein | |||
| 20365 | R | Spy5740IP (100% identity) | GACNNNNNNNRTCC | Sen3890IP |
| 20370 | M | M.SenS3ORF11567P (100% identity) | GACNNNNNNNRTCC | M.Sen3890I |
| 20375 | S | S.SenS224ORF19910P (100% identity) | GACNNNNNNNRTCC | S.Sen3890I |
| 20380 | 106 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1735 | cell division protein DamX | |||
| 1740 | M | M.StyTDamP (100% identity) | GATC | M.Sen3890DamP |
| 1745 | ribulose-phosphate 3-epimerase | |||
| 2225 | DUF2556 domain-containing protein | |||
| 2230 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen3890III |
| 2235 | Fis family transcriptional regulator | |||
| 5535 | 109 aa hypothetical protein | |||
| 5540 | M | M.SenU1590ORF19885P (100% identity) | GATC | M.Sen3890ORF5540P |
| 5545 | replication protein A | |||
| 9210 | phosphohydrolase | |||
| 9215 | M | M.Sens29927DcmP (100% identity) | CCWGG | M.Sen3890DcmP |
| 9220 | V | V.StyTDcmP (100% identity) | V.Sen3890DcmP | |
| 9225 | drug/metabolite exporter YedA | |||
| 14040 | 112 aa hypothetical protein | |||
| ??? | M | M.SenNORF1143P (100% identity) | GATC | M.Sen3890ORF14045P |
| 14055 | 82 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18130 | 33 aa hypothetical protein | |||
| 18135 | R | Ssp6947IIP (99% identity) | CAGAG | Sen3890IIP |
| 18140 | M | M.SenZYXORFDP (100% identity) | CAGAG | M.Sen3890II |
| 18145 | sugar transporter | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15235 | endonuclease | |||
| 15240 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Sen3890ORF15240P |
| 15245 | 75 aa hypothetical protein | |||