Rhodobacter species LPB0142 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Rhodobacter species LPB0142 RM systems
Ref: Kim,E. and Yi,H. unpublished
REBASE ref # 22853
| Sequence length: | GenBank #: | |
| Chromosome: | 3,462,926 bp | CP017781 |
| plasmid pEJ01: | 264,008 bp | CP017782 |
| plasmid pEJ02: | 29,119 bp | CP017783 |
REBASE acronym: Rsp0142
Org_num: 21102
All begin LPB142_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8520 | transposase | |||
| 8530 | R | Rsp43702ORF6695P (94% identity) | Rsp0142ORF8545P | |
| 8535 | 264 aa hypothetical protein | |||
| 8540 | S | S1.MspEFPC2ORF5635P (29% identity) | S.Rsp0142ORF8545P | |
| 8545 | M | M.RspAK1035ORF388P (95% identity) | M.Rsp0142ORF8545P | |
| 8550 | prevent-host-death family protein | |||
| 15810 | WYL domain-containing protein | |||
| 15815 | M | M.CdaTAD1ORF4985P (93% identity) | M.Rsp0142ORF15815P | |
| 15820 | S | S.Pfl10392ORF962P (53% identity) | S.Rsp0142ORF15815P | |
| 15825 | R | CdaTAD1ORF4985P (92% identity) | Rsp0142ORF15815P | |
| 15830 | transposase | |||
| plasmid pEJ01 | ||||
| 17870 | 238 aa hypothetical protein | |||
| 17875 | R | PspS343ORF5995P (93% identity) | Rsp0142ORF17895P | |
| 17880 | phosphoserine phosphatase | |||
| 17885 | S | S.MalKU6BORF56710P (54% identity) | S.Rsp0142ORF17895P | |
| 17890 | hydroxyacid dehydrogenase | |||
| 17895 | M | M.Pfe100066ORF3740P (94% identity) | M.Rsp0142ORF17895P | |
| 17900 | 197 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1525 | ribonuclease HII | |||
| 1530 | M | M.Ssp609ORF15200P (90% identity) | GANTC | M.Rsp0142ORF1530P |
| 1535 | MarR family transcriptional regulator | |||
| 4035 | 127 aa hypothetical protein | |||
| 4040 | M | M.Dba4028ORF891P (62% identity) | CCCGGG | M.Rsp0142ORF4040P |
| 4045 | R | DspTolSRORF6480P (48% identity) | CCCGGG | Rsp0142ORF4040P |
| 4050 | 1036 aa hypothetical protein | |||
| 7075 | 187 aa hypothetical protein | |||
| 7080 | M | M2.Gspcon5ORF7705P (94% identity) | M1.Rsp0142ORF7080P | |
| 7085 | M | M1.Gspcon5ORF7705P (98% identity) | M2.Rsp0142ORF7080P | |
| 7090 | 689 aa hypothetical protein | |||
| 7095 | 324 aa hypothetical protein | |||
| 7100 | endonuclease | |||
| 7105 | ATP-binding protein | |||
| 7110 | M | M.RspHJORF19565P (84% identity) | M3.Rsp0142ORF7080P | |
| 7115 | V | V.RspHJORF19565P (85% identity) | V.Rsp0142ORF7080P | |
| 7120 | 225 aa hypothetical protein | |||
| 7815 | 279 aa hypothetical protein | |||
| ??? | M | M.Ssp609ORF6640P (59% identity) | GTMKAC | M.Rsp0142ORF7820P |
| 7830 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | |||
| 16000 | 232 aa hypothetical protein | |||
| 16005 | M | M.Rca37b4ORF18230P (94% identity) | M.Rsp0142ORF16005P | |
| 16010 | 142 aa hypothetical protein | |||
| 16480 | 64 aa hypothetical protein | |||
| 16485 | M | M.Psp4604ORF4145P (95% identity) | M.Rsp0142ORF16485P | |
| 16490 | 142 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEJ02 | ||||
| 18135 | molybdopterin-guanine dinucleotide biosynthesis | |||
| 18140 | M | M.Avi78ORF25830P (87% identity) | M.Rsp0142ORF18140P | |
| ??? | 796 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6930 | pseudogene | |||
| 6945 | R | Rba558McrBP (78% identity) | Rsp0142McrBP | |
| 6950 | R | Rba558McrCP (92% identity) | Rsp0142McrCP | |
| 6955 | 81 aa hypothetical protein | |||