Propionibacterium freudenreichii JS7 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Propionibacterium freudenreichii JS7 RM systems
Ref: Deptula,P.,Laine,P. et al. unpublished
REBASE ref # 22611
Complete sequence: 2,738,418 bp
GenBank #: LT618776
REBASE acronym: PfrJS7
Org_num: 20469
All begin PFR_JS7-1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 248 | DNA protecting protein DprA | |||
| 249 | R | PfrJS8IP (100% identity) | ATCNNNNNGTCG | PfrJS7IP |
| 250 | S | S.PfrJS8I (100% identity) | ATCNNNNNGTCG | S.PfrJS7I |
| ??? | M | M.PfrJS8I (100% identity) | ATCNNNNNGTCG | M.PfrJS7I |
| 253 | zinc-binding sorbitol dehydrogenase | |||
| 658 | 103 aa Hypothetical protein | |||
| ??? | M | M.PfrJS7aII (100% identity) | CAGNNNNNNTTG | M.PfrJS7II |
| ??? | S | S.PfrJS7aII (100% identity) | CAGNNNNNNTTG | S.PfrJS7II |
| 661 | R | PfrJS7aIIP (100% identity) | CAGNNNNNNTTG | PfrJS7IIP |
| 662 | Transposase, ISlxx5 | |||
| 2248 | ABC transporter multidrug efflux pump, fused | |||
| 2249 | M | M.PfrJS7aIII (100% identity) | CGANNNNNNNTTT | M.PfrJS7III |
| ??? | S | S.PfrJS7aIII (100% identity) | CGANNNNNNNTTT | S.PfrJS7III |
| 2251 | R | PfrJS7aIIIP (100% identity) | CGANNNNNNNTTT | PfrJS7IIIP |
| 2252 | DNA polymerase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 551 | 88 aa Hypothetical protein | |||
| ??? | RM | PfrJS7aORF552P (100% identity) | PfrJS7ORF552P | |
| 554 | PF03235 family protein | |||
| 1518 | 428 aa Hypothetical protein | |||
| 1519 | M | M.PfrJS7aV (100% identity) | CTGAAG | M.PfrJS7V |
| 1520 | 247 aa Hypothetical protein | |||
| 1848 | 81 aa Hypothetical protein | |||
| 1849 | M | M.PfrJS7pORF14P (100% identity) | CCWGG | M.PfrJS7VI |
| 1850 | 143 aa Hypothetical protein | |||
| 1854 | 75 aa Hypothetical protein | |||
| ??? | M | M.PfrJS7pORF22P (100% identity) | M.PfrJS7ORF1855P | |
| 1857 | 99 aa Hypothetical protein | |||
| 2114 | 264 aa Hypothetical protein | |||
| 2115 | V | V.PfrJS7aIVP (100% identity) | CCWGG | V.PfrJS7IVP |
| 2116 | Transposase of ISAar20, ISL3 family | |||
| 2117 | M | M.PfrP12ORFDP (100% identity) | CCWGG | M.PfrJS7IV |
| 2118 | 67 aa Hypothetical protein | |||
| 2269 | 111 aa Hypothetical protein | |||
| 2270 | R | PfrUF1ORFAP (100% identity) | PfrJS7ORF2270P | |
| 2271 | IS1096, TnpA protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1989 | Transporter, anaerobic C4-dicarboxylate uptake | |||
| 1990 | R | PfrJS7aORF1932P (99% identity) | PfrJS7ORF1990P | |
| 1991 | 99 aa Hypothetical protein | |||