Polaribacter species Hel1_33_78 |
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Putative Polaribacter species Hel1_33_78 RM systems
Ref: Varghese,N. and Submissions,S. unpublished
REBASE ref # 22454
Complete sequence: 3,227,923 bp
GenBank #: LT629794
REBASE acronym: Psp3378
Org_num: 20784
All begin SAMN04487762_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10 | Site-specific DNA recombinase | |||
| 11 | M | M.FbaSM2FORFAP (80% identity) | M.Psp3378ORF2870P | |
| 12 | S | S2.Psp3378ORF2870P (62% identity) | S.Psp3378ORF2870P | |
| 13 | R | FbaSM2FORFAP (78% identity) | Psp3378ORF2870P | |
| 14 | protein of unknown function | |||
| 1909 | CAAX protease self-immunity | |||
| 1910 | M | M.FenDK69ORF7375P (52% identity) | M.Psp3378ORF1910P | |
| 1911 | R | ZspY44ORF5810P (80% identity) | Psp3378ORF1910P | |
| 1912 | 305 aa hypothetical protein | |||
| 1972 | DNA methylase | |||
| 1973 | C | C.Cba18ORF6350P (72% identity) | C.Psp3378ORF1973P | |
| 1974 | 463 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1885 | Site-specific recombinase XerD | |||
| 1886 | C | C.MspI7IIP (88% identity) | C.Psp3378ORF1887P | |
| 1887 | RM | MspI7II (65% identity) | Psp3378ORF1887P | |
| 1888 | Superfamily II DNA or RNA helicase | |||
| 1904 | Helix-turn-helix | |||
| 1905 | M | M.AspI324ORFCP (94% identity) | M.Psp3378ORF1905P | |
| 1906 | Signal transduction histidine kinase | |||
| 1931 | 219 aa hypothetical protein | |||
| 1932 | C | C.UbaSCBORF14710P (93% identity) | C.Psp3378ORF1933P | |
| 1933 | M | M.UbaSCBORF14710P (86% identity) | GGCC | M.Psp3378ORF1933P |
| 1934 | R | Pre8TORF16060P (95% identity) | GGCC | Psp3378ORF1933P |
| 1935 | Reverse transcriptase (RNA-dependent DNA | |||
| 1970 | 362 aa hypothetical protein | |||
| 1971 | M | M1.MpaSORF965P (32% identity) | M1.Psp3378ORF1971P | |
| 1972 | M | M1.Msc41ORFAP (53% identity) | M2.Psp3378ORF1971P | |
| 1973 | Helix-turn-helix | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2498 | 105 aa hypothetical protein | |||
| 2499 | R | PtoBMcrCP (81% identity) | Psp3378McrCP | |
| 2500 | R | FbaBBMcrBP (24% identity) | Psp3378McrBP | |
| 2501 | 236 aa hypothetical protein | |||