Endomicrobium trichonymphae Rs-D17 |
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Putative Endomicrobium trichonymphae Rs-D17 RM systems
Ref: Izawa,K. et al. Genome Biol Evol (2016) In press
REBASE ref # 22852
Complete sequence: 1,114,532 bp
GenBank #: AP017459
REBASE acronym: EtrD17
Org_num: 20490
All begin RSTT_, RSTT_pseudo_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9 | hypothetical protein | |||
| 35 | M | M.UtbRsORF37P (95% identity) | M.EtrD17ORF35P | |
| ??? | S | hypothetical protein | S.EtrD17ORF35P | |
| 11 | R | UtbRsORF37P (96% identity) | EtrD17ORF35P | |
| 12 | hypothetical protein | |||
| 170 | 3-dehydroquinate synthetase | |||
| 171 | M | M.UtbRsORF195P (98% identity) | M.EtrD17ORF171P | |
| 42 | pseudogene | |||
| 172 | S | S.UtbRsORF195P (65% identity) | S.EtrD17ORF171P | |
| 173 | R | UtbRsORF195P (98% identity) | EtrD17ORF171P | |
| 174 | 7, | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11 | hypothetical protein | |||
| 12 | R | Esp005ORFQP (72% identity) | GGNCC | EtrD17ORF13P |
| ??? | M | hypothetical protein | GGNCC | M.EtrD17ORF13P |
| 14 | hypothetical protein | |||
| 248 | 225 aa hypothetical protein | |||
| 249 | M | M.EtrORFFP (80% identity) | M.EtrD17ORF249P | |
| ??? | R | UtbRsORFAP (97% identity) | EtrD17ORF249P | |
| 353 | 150 aa conserved hypothetical protein | |||
| 354 | R | EtrORFKP (94% identity) | CCWGG | EtrD17ORF355P |
| 355 | M | M.EtrORFCP (92% identity) | CCWGG | M.EtrD17ORF355P |
| 356 | 183 aa hypothetical protein | |||
| 367 | phosphoribosyl-AMP cyclohydrolase | |||
| ??? | M | M.UtbRsORFOP (98% identity) | CGCG | M.EtrD17ORF71P |
| 368 | DNA methylase | |||
| ??? | site-specific DNA-methyltransferase | |||
| 368 | M | M.EtrORFNP (53% identity) | AAGCTT | M.EtrD17ORF368P |
| 72 | pseudogene | |||
| 83 | hypothetical protein | |||
| ??? | R | UtbRsORFFP (90% identity) | EtrD17ORF85P | |
| 85 | M | M.UtbRsORFFP (97% identity) | GGTGA | M.EtrD17ORF85P |
| 445 | glycine cleavage system L protein | |||
| 457 | UDP-N-acetylglucosamine | |||
| 458 | M | M.UtbRsORFEP (71% identity) | M1.EtrD17ORF458P | |
| ??? | M | 307 aa hypothetical protein ATZ36_09725 | M2.EtrD17ORF458P | |
| 459 | 335 aa hypothetical protein | |||
| 469 | dCTP deaminase | |||
| 86 | R | UtbRsORFDP (96% identity) | CCNNGG | EtrD17ORF87P |
| 87 | M | M.UtbRsORFDP (97% identity) | CCNNGG | M.EtrD17ORF87P |
| 88 | hypothetical protein | |||
| 529 | acetylornithine transaminase | |||
| 98 | R | UtbRsORFLP (90% identity) | GANTC | EtrD17ORF99P |
| ??? | M | M.UtbRsB7ORFAP (93% identity) | GANTC | M.EtrD17ORF99P |
| 530 | acetylglutamate kinase | |||
| 531 | conserved hypothetical protein | |||
| 532 | M | M.UtbRsORF566P (100% identity) | M.EtrD17ORF532P | |
| 533 | conserved hypothetical protein | |||
| 624 | 3-phosphoshikimate 1-carboxyvinyltransferase | |||
| 625 | M | M.OcyMTP1ORFOP (59% identity) | GGCC | M.EtrD17ORF625P |
| 131 | R | UtbRsORFMP (87% identity) | GGCC | EtrD17ORF625P |
| 626 | 3-deoxy-7-phosphoheptulonate synthase | |||
| 703 | dihydroorotate dehydrogenase, catalytic subunit | |||
| 148 | R | UtbRsORF745P (96% identity) | GATC | EtrD17ORF149P |
| 149 | M | M.UtbRsORF745P (98% identity) | GATC | M.EtrD17ORF149P |
| 704 | dihydroorotate dehydrogenase, electron transfer | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14 | conserved hypothetical protein | |||
| 5 | R | UtbRsORFGP (88% identity) | EtrD17ORF6P | |
| 15 | hypothetical AAA domain protein | |||
| 6 | M | M.UtbRsORFGP (98% identity) | M.EtrD17ORF6P | |
| 16 | ribonuclease HII | |||
| 26 | pseudogene | |||
| 27 | R | UtbRsORF126P (97% identity) | EtrD17ORF25P | |
| 108 | Fe-S oxidoreductase | |||
| 380 | 806 aa conserved hypothetical protein | |||
| ??? | M | M.UtbRsORFHP (89% identity) | M.EtrD17ORF381P | |
| 382 | R | UtbRsORFHP (98% identity) | EtrD17ORF381P | |
| 383 | DNA mismatch repair protein MutL | |||