Escherichia coli CFSAN004176 |
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Putative Escherichia coli CFSAN004176 RM systems
Ref: Lorenz,S.C. et al. unpublished
REBASE ref # 22358
| Sequence length: | GenBank #: | |
| Chromosome: | 5,193,734 bp | CP014583 |
| plasmid pCFSAN004176G_02: | 52,297 bp | CP012493 |
| plasmid pCFSAN004176P_03: | 95,721 bp | CP012491 |
REBASE acronym: Eco4176
Org_num: 20278
All begin BCV59_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3540 | Shiga toxin subunit A | |||
| 3560 | M | M.EcoZ1836ORF11435P (100% identity) | M.Eco4176ORF26510P | |
| 3565 | 94 aa hypothetical protein | |||
| 4090 | drug/metabolite exporter YedA | |||
| 4095 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco4176DcmP |
| 4100 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco4176DcmP |
| 4105 | phosphohydrolase | |||
| 6705 | cruciferin | |||
| 6710 | M | M.Sbo812ORFAP (100% identity) | GATC | M.Eco4176ORF6710P |
| 6715 | 27 aa hypothetical protein | |||
| 10895 | crossover junction endodeoxyribonuclease | |||
| 10900 | M | M.Eco4196ORFNP (100% identity) | GATC | M.Eco4176ORF10900P |
| 10905 | 162 aa hypothetical protein | |||
| 13095 | Eae protein | |||
| 13100 | M | M.Eco4177ORF13465P (100% identity) | M.Eco4176ORF13100P | |
| 13105 | 183 aa hypothetical protein | |||
| 16735 | cell division protein DamX | |||
| 16740 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4176DamP |
| 16745 | ribulose-phosphate 3-epimerase | |||
| 17310 | DUF2556 domain-containing protein | |||
| 17315 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco4176ORF17315P |
| 17320 | Fis family transcriptional regulator | |||
| 22690 | ninB protein | |||
| 22695 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco4176ORF22695P |
| 22700 | protein ninE | |||
| 22980 | flagella biosynthesis regulator | |||
| 22985 | M | M.Sen7113ORF20540P (100% identity) | M.Eco4176ORF22985P | |
| 22990 | 65 aa hypothetical protein | |||
| plasmid pCFSAN004176G_02 | ||||
| 27550 | 103 aa hypothetical protein | |||
| 27555 | M | M.Eco4196ORFMP (100% identity) | M.Eco4176ORF27555P | |
| 27560 | conjugal transfer protein TraI | |||
| plasmid pCFSAN004176P_03 | ||||
| 26745 | recombination-associated protein RdgC | |||
| 26750 | M | M.EcoFu022ORF23585P (100% identity) | M.Eco4176ORF26750P | |
| 26770 | 63 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11515 | peptidase S8 | |||
| 11520 | M | M.Eco4196ORFJAP (99% identity) | ACCACC | M.Eco4176ORF11520AP |
| 11525 | transposase | |||
| 11530 | transposase | |||
| 11535 | M | M.Eco4196ORFJBP (100% identity) | ACCACC | M.Eco4176ORF11520BP |
| ??? | R | EcoE24377ORF3323P (100% identity) | ACCACC | Eco4176ORF11520P |
| 11545 | 97 aa hypothetical protein | |||
| 15280 | 612 aa hypothetical protein | |||
| 15285 | M | M.Eco4196I (99% identity) | GTCTC | M.Eco4176ORF15285P |
| ??? | R | Ecow264ORF380P (100% identity) | GTCTC | Eco4176ORF15285P |
| 15295 | 0 aa hypothetical protein | |||