Xylella fastidiosa (almond) |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xylella fastidiosa (almond) RM systems
Ref:
REBASE ref # 7054
Contig set: 2,616,238 bp
Contig GenBank #: NEBC333, NEBC340, NEBC341, NEBC343, NEBC344, NEBC345, NEBC346, NEBC348
REBASE acronym: XfaA
Org_num: 3324
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2 | 132 aa hypothetical protein | |||
| ??? | R | XfaRiv5ORF1215P (100% identity) | XfaAORFC341P | |
| ??? | S | S.XfaRiv5ORF1215P (100% identity) | S.XfaAORFC341P | |
| ??? | M | M.XfaRiv5ORF1215P (100% identity) | M.XfaAORFC341P | |
| 34 | 69 aa hypothetical protein | |||
| 12 | 67 aa hypothetical protein | |||
| 13 | M | M.XfaSyVAORF2573P (100% identity) | M.XfaAORFC343P | |
| 17 | S | S.XfaSyVAORF2573P (100% identity) | S.XfaAORFC343P | |
| 20 | 73 aa hypothetical protein | |||
| 21 | 78 aa hypothetical protein , BLAST values: 129 1e-29 | |||
| 22 | 194 aa hypothetical protein , BLAST values: 258 5e-68 | |||
| 23 | 159 aa hypothetical protein | |||
| 25 | R | XfaSyVAORF2573P (61% identity) | XfaAORFC343AP | |
| 30 | R | type I restriction-modification system endonuclease , BLAST values: 742 0.0 | XfaAORFC343BP | |
| 32 | 82 aa hypothetical protein | |||
| 11 | 62 aa hypothetical protein | |||
| 13 | M | M.XfaDORF880P (99% identity) | M.XfaAORFC3441P | |
| 14 | 89 aa hypothetical protein | |||
| 15 | 60 aa hypothetical protein | |||
| ??? | S | S.XfaDORF880P (100% identity) | S.XfaAORFC3441P | |
| 21 | R | XfaDORF880P (100% identity) | XfaAORFC3441P | |
| 30 | probable restriction-modification system protein | |||
| 21 | type I restriction-modification system endonuclease | |||
| 30 | M | M.XfaS2ORF10940P (96% identity) | M.XfaAORFC3442P | |
| 39 | S | S.XfaEM3ORF10555P (97% identity) | S.XfaAORFC3442P | |
| 44 | R | XfaRiv5ORF10665P (99% identity) | XfaAORFC3442P | |
| 49 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5 | 68 aa hypothetical protein | |||
| 6 | M | M.XfaSyVAORF2398P (85% identity) | M.XfaAORFC333P | |
| 10 | transposase OrfB | |||
| 16 | 122 aa hypothetical protein | |||
| 17 | R | XfaY3CORF8005P (100% identity) | CGTACG | XfaAORFC340P |
| 20 | M | M.XfaY3CORF8005P (99% identity) | CGTACG | M.XfaAORFC340P |
| 21 | 84 aa hypothetical protein | |||
| 10 | 76 aa hypothetical protein | |||
| 11 | R | XfaMORF1762P (100% identity) | GCATGC | XfaAORFC345P |
| ??? | M | M.XfaMORF1762P (97% identity) | GCATGC | M.XfaAORFC345P |
| 17 | 71 aa hypothetical protein | |||
| 5 | 69 aa hypothetical protein | |||
| 7 | M | M.XfaSyVAORF2398P (85% identity) | M.XfaAORFC333P | |
| 11 | DNA restriction endonuclease | |||
| 7 | gp27 | |||
| 11 | R | XfaBB01ORFEP (98% identity) | GCCGGC | XfaAORFC348P |
| 15 | 119 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8 | 62 aa hypothetical protein | |||
| ??? | M | M.XfaRiv5ORF4780P (100% identity) | M.XfaAORFC346P | |
| 17 | 63 aa hypothetical protein , BLAST values: 103 3e-22 | |||