Escherichia coli O157:H7 |
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Putative Escherichia coli O157:H7 RM systems
Ref: Uhlich,G.A. et al. unpublished
REBASE ref # 22316
| Sequence length: | GenBank #: | |
| Chromosome: | 5,759,078 bp | LPWC00000000 (NZ_LPWC00000000) |
| Chromosome: | 5,375,715 bp | CP041623 |
| plasmid pO157_like: | 95,081 bp | CP041624 |
REBASE acronym: Eco43894
Org_num: 5754
All begin AU469_, FNZ21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6060 | 94 aa hypothetical protein | |||
| 6065 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco43894ORF6070P |
| 6070 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco43894ORF6070P |
| 6075 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco43894ORF6070P |
| 6080 | 113 aa hypothetical protein | |||
| Chromosome | ||||
| 1780 | DUF262 domain-containing protein | |||
| 1785 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco43888ORF1790P |
| 1790 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco43888ORF1790P |
| 1795 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco43888ORF1790P |
| 1800 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28290 | 335 aa hypothetical protein | |||
| 28295 | M | M.SflN97ORF8425P (100% identity) | GATC | M.Eco43894ORF28295P |
| 28300 | ninB protein | |||
| 6345 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco43894ORF6345P |
| 6350 | helicase | |||
| 11680 | cell division protein DamX | |||
| 11685 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco43894DamP |
| 11690 | ribulose-phosphate 3-epimerase | |||
| 12215 | 59 aa hypothetical protein | |||
| 12220 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco43894ORF12220P |
| 12225 | Fis family transcriptional regulator | |||
| 18315 | ninB protein | |||
| 18320 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco43894ORF18320P |
| 18325 | protein ninE | |||
| 19670 | phosphohydrolase | |||
| 19675 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco43894DcmP |
| 19680 | V | V.EcosPA8DcmP (100% identity) | V.Eco43894DcmP | |
| 19685 | drug/metabolite exporter YedA | |||
| 22855 | 81 aa hypothetical protein | |||
| 22860 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco43894ORF22860P | |
| 22865 | 329 aa hypothetical protein | |||
| 24430 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 24445 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco43894ORF24445P | |
| 24450 | TrmB family transcriptional regulator | |||
| Chromosome | ||||
| 2020 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco43888ORF2020P |
| 2025 | DEAD/DEAH box helicase | |||
| 2210 | osmoprotectant transport activator ProQ | |||
| 2215 | M | M.SflFF24DndBP (100% identity) | M.Eco43888DndBP | |
| 2220 | DNA phosphorothioation system sulfurtransferase | |||
| 2215 | DNA sulfur modification protein DndB | |||
| 2220 | M | M.SflFF24DndCP (100% identity) | M.Eco43888DndCP | |
| 2225 | DNA sulfur modification protein DndD | |||
| 2220 | DNA phosphorothioation system sulfurtransferase | |||
| 2225 | M | M.SflFF24DndDP (100% identity) | M.Eco43888DndDP | |
| 2230 | DNA sulfur modification protein DndE | |||
| 2225 | DNA sulfur modification protein DndD | |||
| 2230 | M | M.SflFF24DndEP (100% identity) | M.Eco43888DndEP | |
| 2235 | DGQHR domain-containing protein | |||
| 2245 | 172 aa hypothetical protein | |||
| 2250 | R | EcoH66DptHP (100% identity) | Eco43888DptHP | |
| 2255 | DNA phosphorothioation-dependent restriction | |||
| 2250 | DNA phosphorothioation-dependent restriction | |||
| 2255 | R | SflFF24DptGP (100% identity) | Eco43888DptGP | |
| 2260 | DNA phosphorothioation-dependent restriction | |||
| 2255 | DNA phosphorothioation-dependent restriction | |||
| 2260 | R | EcoB6914DptFP (100% identity) | Eco43888DptFP | |
| 2265 | integrase | |||
| 4940 | ribulose-phosphate 3-epimerase | |||
| 4945 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco43888DamP |
| 4950 | cell division protein DamX | |||
| 7915 | DUF2556 domain-containing protein | |||
| 7920 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco43888ORF7920P |
| 7925 | DNA-binding transcriptional regulator Fis | |||
| 17815 | TrmB family transcriptional regulator | |||
| 17820 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco43888ORF17820P | |
| 17835 | 61 aa hypothetical protein | |||
| 19415 | 329 aa hypothetical protein | |||
| 19420 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco43888ORF19420P | |
| 19425 | 81 aa hypothetical protein | |||
| 22590 | drug/metabolite exporter YedA | |||
| 22595 | V | V.EcosPA8DcmP (100% identity) | V.Eco43888DcmP | |
| 22600 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco43888DcmP |
| 22605 | phosphohydrolase | |||
| plasmid pO157_like | ||||
| 27215 | 59 aa hypothetical protein | |||
| 27220 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco43888ORF27220P | |
| 27225 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6080 | 113 aa hypothetical protein | |||
| ??? | R | EcoX21GmrDP (100% identity) | Eco43894GmrDP | |
| 6090 | 293 aa hypothetical protein | |||