Ref: Azuma,Y. et al. Nucleic Acids Res. (2009) In press

REBASE ref # 11262

Sequence length:GenBank #:
Chromosome: 2,907,495 bp AP011121 (NC_013209)
plasmid pAPA01-020: 182,940 bp AP011123 (NC_013211)
plasmid pAPA01-030: 49,961 bp AP011124 (NC_013212)

REBASE acronym: Apa3283

Org_num: 5553

 

All begin APA01_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
14220 transposase
14230 M type I DNA methyltransferase M subunit M.Apa3283ORF14230P
??? S S1.Apa32837ORF14230P (100% identity) S1.Apa3283ORF14230P
14240 transposase
14250 S S2.Apa32837ORF14230P (100% identity) S2.Apa3283ORF14230P
14260 R Apa32837ORF14230AP (100% identity) Apa3283ORF14230AP
14270 transposase
14280 R type I endonuclease/restriction R subunit Apa3283ORF14230BP
14290 metal-dependent hydrolase
 
plasmid pAPA01-020
 
41810 transposase
41820 R type I endonuclease restriction R subunit Apa3283ORF41890P
41830 S type I DNA specificity S subunit S.Apa3283ORF41890AP
41840 transposase
41850 transposase
41860 S S.Apa32837ORF41890BP (100% identity) S.Apa3283ORF41890BP
41870 DNA polymerase beta subunit like
41880 nucleotidyltransferase
41890 M M.ApaAb3ORF14010P (100% identity) M.Apa3283ORF41890P
41900 NADH:flavin oxidoreductase
 
42370 metal-dependent hydrolase
42380 R Apa32837ORF42400P (100% identity) Apa3283ORF42400P
42390 S S.Apa32837ORF42400P (100% identity) S.Apa3283ORF42400P
42400 M M.Apa32837ORF42400P (100% identity) M.Apa3283ORF42400P
42410 198 aa hypothetical protein
 
43170 protease/amidase
??? R Apa32837ORF43210P (100% identity) Apa3283ORF43210P
43200 S S.Apa32837ORF43210P (100% identity) S.Apa3283ORF43210P
43210 M M.Apa32837ORF43210P (100% identity) M.Apa3283ORF43210P
43220 139 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
8000 mitochondrial import inner membrane translocase
8020 M M.Apa386BORF2307P (100% identity) GTAC M.Apa3283ORF8020P
8030 cytochrome c peroxidase
 
9680 ribonuclease HII
9690 M M.AspKB6I (100% identity) GANTC M.Apa3283ORF9690P
9700 ankyrin repeat protein
 
18730 59 aa hypothetical protein
18740 RM Apa32837ORF18740P (100% identity) Apa3283ORF18740P
18750 613 aa hypothetical protein
 
plasmid pAPA01-030
 
44000 694 aa hypothetical protein
44010 RM Apa32837ORF44010P (100% identity) Apa3283ORF44010P
44020 cell filamentation cAMP-inducing protein Fic
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
22890 228 aa hypothetical protein
22900 R Apa32837McrBP (100% identity) Apa3283McrBP
22910 228 aa hypothetical protein