Burkholderia pseudomallei MS |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Burkholderia pseudomallei MS RM systems
Ref: Vadivelu,J. unpublished
REBASE ref # 16812
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,059,297 bp | CP016636 |
| chromosome 2: | 3,254,339 bp | CP016637 |
REBASE acronym: BpsMS
Org_num: 20114
All begin A7U59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 15190 | phenylacetic acid degradation protein | |||
| ??? | R | BpsM1IVP (100% identity) | CAYNNNNNNNCTCC | BpsMSIVP |
| ??? | M | M.BpsM1IV (100% identity) | CAYNNNNNNNCTCC | M.BpsMSIV |
| ??? | S | S.BpsM1IV (100% identity) | CAYNNNNNNNCTCC | S.BpsMSIV |
| 15210 | 83 aa hypothetical protein | |||
| 15260 | 404 aa hypothetical protein | |||
| ??? | S | S.BpsM1III (100% identity) | CCANNNNNNNNRTGCC | S.BpsMSIII |
| 15270 | M | M.BpsM1III (100% identity) | CCANNNNNNNNRTGCC | M.BpsMSIII |
| 15275 | R | BpsM1IIIP (100% identity) | CCANNNNNNNNRTGCC | BpsMSIIIP |
| 15280 | 880 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 820 | glycosyl transferase family 25 | |||
| 825 | M | M.BspBDU8ORF14540P (100% identity) | M.BpsMSORF825P | |
| 830 | hypothetical protein | |||
| 17540 | baseplate assembly protein | |||
| ??? | M | M.BpsM1ORF17585P (100% identity) | M.BpsMSORF17545P | |
| 17555 | integrase | |||
| chromosome 2 | ||||
| 18795 | transposase | |||
| ??? | V | V.BpsM1ORFAP (100% identity) | V.BpsMSORFAP | |
| 18800 | transposase | |||
| 18805 | transposase | |||
| ??? | C | C.BpsM1ORFAP (100% identity) | C.BpsMSORFAP | |
| ??? | M | M.BpsM1ORFAP (100% identity) | GTCGAC | M.BpsMSORFAP |
| ??? | R | PpnRB38ORF11825P (100% identity) | BpsMSORFAP | |
| 18815 | 411 aa hypothetical protein | |||
| 24810 | tryptophan synthase subunit beta | |||
| 24815 | M | M.BspBGKORF4324P (100% identity) | GTWWAC | M.BpsMSII |
| 24820 | tryptophan synthase subunit alpha | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 15660 | 102 aa hypothetical protein | |||
| 15665 | R | BpsM1IP (100% identity) | CACAG | BpsMSIP |
| 15670 | M | M.BpsW107ORF1669P (99% identity) | CACAG | M.BpsMSI |
| 15675 | porin | |||