Helicobacter species MIT 01-6242 |
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Putative Helicobacter species MIT 01-6242 RM systems
Ref: Mannion,A. et al. unpublished
REBASE ref # 22504
Complete sequence: 1,594,790 bp
GenBank #: CP016503
REBASE acronym: Hsp6242
Org_num: 20068
All begin BBW65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 615 | 216 aa hypothetical protein | |||
| 620 | R | 1017 aa hypothetical protein | Hsp6242ORF645P | |
| 625 | 233 aa hypothetical protein | |||
| 630 | 62 aa hypothetical protein | |||
| 635 | S | S.AbuAB17ORFFP (43% identity) | S.Hsp6242ORF645P | |
| 640 | 69 aa hypothetical protein | |||
| 645 | M | M.Hch13205II (69% identity) | M.Hsp6242ORF645P | |
| 650 | 197 aa hypothetical protein | |||
| 2445 | 227 aa hypothetical protein | |||
| 2450 | S | S.Cup11541ORF1174P (37% identity) | S.Hsp6242ORF2455P | |
| 2455 | M | M.Cup11541ORF1174P (77% identity) | M.Hsp6242ORF2455P | |
| 2460 | 234 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 195 | 190 aa hypothetical protein | |||
| 200 | R | HciP01DORFLP (46% identity) | GAAGA | Hsp6242ORF205P |
| 205 | M | M1.Che51209ORF1542P (83% identity) | GAAGA | M1.Hsp6242ORF205P |
| 210 | 226 aa hypothetical protein | |||
| 215 | M | M2.Cav24591ORF1709P (76% identity) | GAAGA | M2.Hsp6242ORF205P |
| 220 | 258 aa hypothetical protein | |||
| 3065 | 375 aa hypothetical protein | |||
| 3070 | RM | HmuAORF11990P (42% identity) | Hsp6242ORF3070P | |
| 3075 | RNA polymerase factor sigma-54 | |||
| 3605 | 70 aa hypothetical protein | |||
| 3610 | RM | HmuAORF7310P (65% identity) | Hsp6242ORF3610P | |
| 3615 | 600 aa hypothetical protein | |||
| 5505 | recombination protein RecO | |||
| 5510 | M | 159 aa hypothetical protein | CATG | M.Hsp6242ORF5510P |
| 5515 | 104 aa hypothetical protein | |||
| 6065 | OLD family endonuclease | |||
| 6070 | RM | Hca1463ORFQP (19% identity) | Hsp6242ORF6070P | |
| 6075 | 86 aa hypothetical protein | |||
| 7130 | transcriptional regulator | |||
| 7135 | R | 125 aa hypothetical protein | GATC | Hsp6242ORF7140P |
| 7140 | M | M.Hty6810ORF3565P (72% identity) | GATC | M.Hsp6242ORF7140P |
| 7145 | 555 aa hypothetical protein | |||
| 7150 | 251 aa hypothetical protein | |||
| 7155 | M | M.Hch13205I (73% identity) | GANTC | M.Hsp6242ORF7155P |
| 7160 | 3-oxoacyl-[acyl-carrier-protein] reductase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2410 | 79 aa hypothetical protein | |||
| 2415 | M | M.Cje11348ORF2740P (57% identity) | M.Hsp6242ORF2415P | |
| 2420 | R | Cup6824ORF2315P (36% identity) | CTGCAG | Hsp6242ORF2415P |
| 2425 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3635 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 3640 | R | Cla11937McrBP (24% identity) | Hsp6242McrBP | |
| 3645 | R | MmaC7McrCP (24% identity) | Hsp6242McrCP | |
| 3650 | 906 aa hypothetical protein | |||