Escherichia coli O25b:H4 |
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Putative Escherichia coli O25b:H4 RM systems
Ref: Alyamani,E.A.J. et al. unpublished
REBASE ref # 22353
| Sequence length: | GenBank #: | |
| Chromosome: | 5,289,898 bp | CP015085 |
| Chromosome: | 29,509 bp | CP015088 |
| plasmid unnamed: | 130,920 bp | CP015086 |
REBASE acronym: EcoO25b
Org_num: 19778
All begin WLH_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3959 | 32 aa hypothetical protein | |||
| 3960 | R | EcosS9ORF3165P (99% identity) | RTACNNNNGTG | EcoO25bORF3962P |
| ??? | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoO25bORF3962P |
| 3962 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoO25bORF3962P |
| 3963 | 5-methylcytosine-specific restriction enzyme | |||
| 4347 | 43 aa hypothetical protein | |||
| 4348 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoO25bORF4349P |
| 4349 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoO25bORF4349P |
| ??? | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoO25bORF4349P |
| 4351 | 267 aa Hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 734 | yedA | |||
| 735 | V | V.SflC32DcmP (74% identity) | V.EcoO25bDcmP | |
| 736 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoO25bDcmP |
| 737 | yedJ | |||
| 1201 | essD | |||
| 1202 | M | M.Sso63633ORF22290P (100% identity) | M.EcoO25bORF1202P | |
| 1203 | 75 aa hypothetical protein | |||
| 1210 | LexA repressor | |||
| 1211 | M | M.EcoS6995ORFGP (100% identity) | GATC | M.EcoO25bORF1211P |
| 1212 | yfdN | |||
| 2478 | fis | |||
| ??? | M | M.EcoUTORF3704P (100% identity) | ATGCAT | M.EcoO25bORF2479P |
| 2480 | 68 aa hypothetical protein | |||
| 2604 | rpe | |||
| 2605 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoO25bDamP |
| 2606 | damX | |||
| 3368 | yfdN | |||
| 3369 | M | M.EcoS6995ORFGP (100% identity) | GATC | M.EcoO25bORF3369P |
| 3370 | LexA repressor | |||
| 3375 | 75 aa hypothetical protein | |||
| 3376 | M | M.Sso63633ORF22290P (100% identity) | M.EcoO25bORF3376P | |
| 3377 | essD | |||
| 3876 | Rod shape-determining protein mreC | |||
| 3877 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoO25bORF3877P |
| 3878 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoO25bORF3877P |
| 3879 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoO25bORF3877P |
| 3880 | 5-methylcytosine-specific restriction enzyme C | |||
| 4962 | 75 aa hypothetical protein | |||
| 4963 | M | M.EcoW113ORFIP (99% identity) | GATC | M.EcoO25bORF4963P |
| 4964 | Replication gene A protein | |||
| 5156 | 71 aa hypothetical protein | |||
| 5157 | M | M.KpnYN1ORFGP (100% identity) | M.EcoO25bORF5157P | |
| 5158 | Transcriptional regulator, Cro/CI family | |||
| 5644 | 94 aa hypothetical protein | |||
| 5645 | M | M.EcosS9ORF10680P (100% identity) | M.EcoO25bORF5645P | |
| 5646 | 108 aa Hypothetical protein | |||
| Chromosome | ||||
| 5947 | M | dam | GATC | M.EcoO25bORF5947P |
| 5948 | Replication gene A protein | |||
| plasmid unnamed | ||||
| 5768 | 103 aa Hypothetical protein | |||
| 5769 | M | M.UbapRSB107ORFAP (100% identity) | M.EcoO25bORF5769P | |
| 5770 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3879 | 579 aa Hypothetical protein | |||
| 3880 | R | EcosS9McrCP (100% identity) | EcoO25bMcrCP | |
| 3881 | 5-methylcytosine-specific restriction enzyme B | |||