Escherichia coli O157:H7 str. TW14359 |
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Putative Escherichia coli O157:H7 str. TW14359 RM systems
Ref: Kulasekara,B.R. et al. Infect. Immun. (2009) In press
REBASE ref # 11197
| Sequence length: | GenBank #: | |
| Chromosome: | 5,528,136 bp | CP001368 (NC_013008) |
| plasmid pO157: | 94,601 bp | CP001369 (NC_013010) |
REBASE acronym: EcoTW
Org_num: 5499
All begin ECSP_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5429 | conserved protein | |||
| 5430 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoTWI |
| 5431 | M | M.EcoX21ORF4993P (100% identity) | CACNNNNNNNCTGG | M.EcoTWI |
| 5432 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoTWIP |
| 5433 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1670 | 106 aa hypothetical protein | |||
| 1671 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoTWORF1671P | |
| 1674 | 179 aa hypothetical protein | |||
| 1741 | 33 aa hypothetical protein | |||
| 1742 | M | M.EcoTR01ORF9070P (100% identity) | M.EcoTWORF1742P | |
| 1744 | 48 aa hypothetical protein | |||
| 2563 | predicted inner membrane protein | |||
| 2564 | V | V.EcosPA8DcmP (100% identity) | V.EcoTWDcmP | |
| 2565 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoTWDcm |
| 2566 | predicted phosphohydrolase | |||
| 2732 | anti-termination protein | |||
| 2733 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoTWORF2733P |
| 2734 | recombination protein ninB | |||
| 3262 | NinE protein | |||
| 3263 | M | M.EcoTR01ORF17325P (100% identity) | GATC | M.EcoTWORF3263P |
| 3264 | endonuclease | |||
| 3292 | 55 aa hypothetical protein | |||
| 3293 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoTWORF3293P |
| 3294 | 70 aa hypothetical protein | |||
| 4230 | global DNA-binding transcriptional dual | |||
| 4231 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoTWORF4231P |
| 4232 | predicted membrane protein | |||
| 4335 | D-ribulose-5-phosphate 3-epimerase | |||
| 4336 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoTWDamP |
| 4337 | membrane protein, interferes with cell division | |||
| 5131 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoTWORF5132P | |
| 5133 | 109 aa hypothetical protein | |||
| 5386 | ATP-dependent helicase | |||
| 5387 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoTWII |
| plasmid pO157 | ||||
| 6043 | 101 aa hypothetical protein | |||
| 6044 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoTWORF6044P | |
| 6045 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5427 | conserved protein | |||
| ??? | R | EcosPA8GmrSDP (100% identity) | EcoTWGmrSDP | |
| 5429 | conserved protein | |||