Helicobacter pylori L7 |
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Putative Helicobacter pylori L7 RM systems
Ref: Montano,V. et al. unpublished
REBASE ref # 22113
Complete sequence: 1,617,826 bp
GenBank #: CP011482
REBASE acronym: HpyL7
Org_num: 19544
All begin AA971_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1930 | polyphosphate kinase | |||
| 1940 | S | S.HpySP806XIII (98% identity) | S.HpyL7ORF1945P | |
| 1945 | M | N-6 DNA methylase | M.HpyL7ORF1945P | |
| 1950 | integrase | |||
| 2065 | relaxase | |||
| 2070 | M | N-6 DNA methylase | M.HpyL7ORF2070P | |
| 2075 | R | HpyIN7ORF2325P (92% identity) | HpyL7ORF2070P | |
| 2080 | 631 aa hypothetical protein | |||
| 2345 | membrane protein | |||
| 2350 | M | M.HpyK027VI (95% identity) | M.HpyL7ORF2350P | |
| 2355 | S | S.HpyLI24XV (59% identity) | S.HpyL7ORF2350P | |
| 2360 | R | HpyHPYORF3345P (95% identity) | HpyL7ORF2350P | |
| 2365 | hydroxyethylthiazole kinase | |||
| 2640 | cadmium transporter | |||
| 2645 | S | S.HpyLI08ORF3855P (63% identity) | S.HpyL7ORF2645P | |
| 2650 | membrane protein | |||
| 6605 | metal-dependent hydrolase | |||
| 6610 | R | HpyK007VIIIP (96% identity) | HpyL7ORF6615P | |
| 6615 | M | M.HpyK110XI (96% identity) | M.HpyL7ORF6615P | |
| 6620 | pseudogene | |||
| 6625 | S | S.Hpy1139ORFWP (96% identity) | S.HpyL7ORF6615P | |
| 6630 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 190 | agmatine deiminase | |||
| 195 | M | M1.HpyU425V (97% identity) | CCTC | M1.HpyL7ORF195P |
| 200 | M | M2.HpyK034IIIP (98% identity) | CCTC | M2.HpyL7ORF195P |
| 205 | R | Hpy274ORF78P (65% identity) | CCTC | HpyL7ORF195P |
| 210 | DNA methyltransferase | |||
| 405 | pseudogene | |||
| 410 | M | M.HpyK016IX (96% identity) | GATC | M.HpyL7ORF410P |
| 415 | alpha-1,2-fucosyltransferase | |||
| 1100 | exodeoxyribonuclease VII large subunit | |||
| 1105 | R | HpyF004IIIP (97% identity) | CCGG | HpyL7ORF1110P |
| 1110 | M | M.Hpyfe22ORF5920P (99% identity) | CCGG | M.HpyL7ORF1110P |
| 1115 | chaperone protein ClpB | |||
| 1345 | polysaccharide deacetylase | |||
| 1350 | R | HpyKG10VIP (98% identity) | CTNAG | HpyL7ORF1355P |
| 1355 | M | M.HpyI023VI (99% identity) | CTNAG | M.HpyL7ORF1355P |
| 1360 | 125 aa hypothetical protein | |||
| 2135 | glutamyl-tRNA synthetase | |||
| 2140 | M | M.Hpyfe92ORF5065P (98% identity) | ATTAAT | M.HpyL7ORF2140P |
| 2145 | glycosyltransferase 9 family protein | |||
| 2150 | GTP-binding protein | |||
| 2155 | M | M.HpyCOL301II (99% identity) | ACNGT | M.HpyL7ORF2155P |
| 2160 | R | HpyK027IIP (94% identity) | ACNGT | HpyL7ORF2155P |
| 2165 | DNA methyltransferase | |||
| 2160 | pseudogene | |||
| 2165 | M | M.Hpyfe70ORF4885P (99% identity) | ACGT | M.HpyL7ORF2165P |
| 2170 | R | HpyC210ORF2225P (98% identity) | ACGT | HpyL7ORF2165P |
| 2175 | catalase | |||
| 3230 | pseudogene | |||
| ??? | RM | HpyK035ORF3290P (41% identity) | HpyL7ORF3235CP | |
| ??? | RM | DEAD/DEAH box helicase family protein | HpyL7ORF3235BP | |
| ??? | RM | 94 aa hypothetical protein N202_03935 | HpyL7ORF3235AP | |
| 3245 | glycerol-3-phosphate dehydrogenase | |||
| 4050 | membrane protein | |||
| ??? | R | HpyP104XIP (79% identity) | GTAC | HpyL7ORF4055P |
| 4060 | HrgC | |||
| 4265 | flagellar hook protein FlgE | |||
| 4270 | R | HpyH006XIIIP (90% identity) | GTNNAC | HpyL7ORF4275P |
| 4275 | M | M.HpyIR9IX (97% identity) | GTNNAC | M.HpyL7ORF4275P |
| 4280 | ATP-dependent DNA helicase | |||
| 4930 | 144 aa hypothetical protein | |||
| 4935 | M | M.Hpy479C2ORFCP (97% identity) | GCGC | M.HpyL7ORF4935P |
| 4940 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5580 | hydrolase | |||
| 5585 | M | M.HpySW27I (97% identity) | CATG | M.HpyL7ORF5585P |
| 5590 | 59 aa hypothetical protein | |||
| 6295 | peptidase S41 | |||
| 6300 | RM | HpyK023VIIP (96% identity) | GANTC | HpyL7ORF6305P |
| 6305 | M | M.HpyNP06VI (98% identity) | GANTC | M.HpyL7ORF6305P |
| 6310 | RM | Type IIG restriction-modification enzyme | GANTC | HpyL7ORF6305CP |
| ??? | RM | HpyHP34ORF250P (34% identity) | GANTC | HpyL7ORF6305BP |
| ??? | RM | DNA methyltransferase | GANTC | HpyL7ORF6305AP |
| 6320 | nicotinate-nucleotide pyrophosphorylase | |||
| 6370 | chemotaxis protein CheY | |||
| 6375 | R | Hpy75ORF6865P (81% identity) | GAAGA | HpyL7ORF6385P |
| 6385 | M | M1.Hpyfe19ORF7045P (98% identity) | GAAGA | M1.HpyL7ORF6385P |
| 6390 | M | M.HpyP010VI (97% identity) | GAAGA | M2.HpyL7ORF6385P |
| ??? | hypothetical protein | |||
| 6515 | 93 aa hypothetical protein | |||
| 6520 | R | HpyIS9XIP (97% identity) | TGCA | HpyL7ORF6525P |
| 6525 | M | M.HpyCA19IX (99% identity) | TGCA | M.HpyL7ORF6525P |
| 6530 | 67 aa hypothetical protein | |||
| 6695 | DEAD/DEAH box helicase | |||
| 6700 | RM | pseudogene | HpyL7ORF6700AP | |
| 6705 | transposase | |||
| 6710 | resolvase | |||
| 6715 | RM | 240 aa hypothetical protein | HpyL7ORF6700BP | |
| 6720 | RM | 141 aa hypothetical protein | HpyL7ORF6700CP | |
| 6725 | 30 aa hypothetical protein | |||
| 6800 | membrane protein | |||
| 6805 | R | HpyKH35ORFPP (96% identity) | CCATC | HpyL7ORF6810P |
| 6810 | M | M1.HpyMA17IX (93% identity) | CCATC | M1.HpyL7ORF6810P |
| 6815 | M | M2.HpyLI06V (99% identity) | CCATC | M2.HpyL7ORF6810P |
| 6820 | permease | |||
| 6945 | amidophosphoribosyltransferase | |||
| 6950 | RM | Hpyfe1ORF445P (98% identity) | HpyL7ORF6950P | |
| 6955 | S | S.HpyKH28ORFRP (93% identity) | S.HpyL7ORF6950P | |
| 6960 | DNA polymerase I | |||
| 7365 | Laminin subunit alpha-2 precursor | |||
| 7370 | R | Hpyfe103ORF2025P (98% identity) | TCNNGA | HpyL7ORF7375P |
| 7375 | M | M.HpyKG6XIII (99% identity) | TCNNGA | M.HpyL7ORF7375P |
| 7380 | acetyl-CoA carboxylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3595 | 54 aa hypothetical protein | |||
| 3600 | M | M.HpyU208ORF3830P (95% identity) | M.HpyL7ORF3600P | |
| 3605 | R | HpySWT01ORF3005P (93% identity) | HpyL7ORF3600P | |
| 3610 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 6390 | pseudogene | |||
| ??? | M | M.Hpybs3ORFXP (95% identity) | M.HpyL7ORF6395P | |
| 6405 | R | HpyLI31ORF6655P (92% identity) | HpyL7ORF6395P | |
| 6410 | rod shape-determining protein MreC | |||
| 6455 | endonuclease | |||
| 6460 | M | M.HpyF013ORF6535P (96% identity) | M.HpyL7ORF6460P | |
| 6465 | R | HpyUM111ORF2910P (93% identity) | HpyL7ORF6460P | |
| 6470 | biotin synthase | |||
| 6685 | ATP-dependent DNA helicase RecG | |||
| 6690 | M | M.HpyIS11ORF7405P (94% identity) | M.HpyL7ORF6690P | |
| 6695 | R | Hpy2ALORF3045P (94% identity) | HpyL7ORF6690P | |
| 6700 | pseudogene | |||