Photorhabdus asymbiotica |
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Putative Photorhabdus asymbiotica RM systems
Ref: Wilkinson,P. et al. BMC Genomics 10 (1), 302 (2009)
REBASE ref # 11190
Complete sequence: 5,064,808 bp
GenBank #: FM162591 (NC_012962)
REBASE acronym: PasA
Org_num: 5490
All begin PAU_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3935 | 1081 aa conserved hypothetical protein | |||
| 3936 | R | PheVMGORF8610P (95% identity) | PasAORF3937P | |
| 3937 | M | M.PheVMGORF8610P (93% identity) | M.PasAORF3937P | |
| 3938 | S | S.PheVMGORF8610P (55% identity) | S.PasAORF3937P | |
| 3939 | probable rna polymerase sigma factor feci | |||
| 3967 | 105 aa conserved hypothetical protein | |||
| 3968 | M | M.Eca1428ORF9855P (70% identity) | M.PasAORF3968P | |
| 3969 | anticodon nuclease prrc | |||
| 3970 | R | KquS1741ORFAP (98% identity) | PasAORF3968P | |
| 3971 | 100 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 430 | atpase involved in dna repair | |||
| 431 | RM | 1208 aa conserved hypothetical protein | PasAORF431P | |
| 432 | 866 aa Hypothetical Protein | |||
| 3140 | 116 aa conserved hypothetical protein | |||
| 3141 | M | M.PasAORF3562P (100% identity) | GATC | M.PasAORF3141P |
| 3142 | 75 aa Hypothetical protein | |||
| 3561 | Phage integrase | |||
| 3562 | M | M.PasAORF3141P (100% identity) | GATC | M.PasAORF3562P |
| 3563 | similar to Glutamyl-tRNA(Gln) amidotransferase | |||
| 3945 | iron(iii) dicitrate transport atp-binding | |||
| 3946 | M | M.PluBA1ORF2366P (81% identity) | GGATCC | M.PasAORF3946P |
| 3947 | C | 88 aa conserved hypothetical protein | C.PasAORF3946P | |
| 3948 | 297 aa conserved hypothetical protein | |||
| 4298 | bacteriophage protein | |||
| 4299 | M | dna-cytosine methyltransferase | M1.PasAORF4299P | |
| 4300 | M | cytosine-specific DNA methyltransferase | M2.PasAORF4299P | |
| 4301 | phage replication protein | |||
| 4303 | 180 aa Hypothetical protein | |||
| 4304 | M | M.Pas43949ORF1932P (100% identity) | GATC | M.PasAORF4304P |
| 4305 | probable bacteriophage cox protein | |||
| 4394 | 190 aa conserved hypothetical protein | |||
| 4395 | M | M1.SmaQC19ORF30160P (79% identity) | M.PasAORF4395P | |
| 4396 | R | SmaQC19ORF30160P (83% identity) | CGGCCG | PasAORF4395P |
| 4397 | trna modification gtpase trme | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3933 | aspartokinase | |||
| 3934 | R | EkoCRE18MrrP (89% identity) | PasAMrrP | |
| 3935 | 1081 aa conserved hypothetical protein | |||