Frankia species CeD |
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Putative Frankia species CeD RM systems
Ref: Ngom,M. et al. Genome Announc 4 (2) (2016)
REBASE ref # 21941
Contig set: 4,997,714 bp
GenBank #: JPGU00000000 (NZ_JPGU00000000)
REBASE acronym: FspCeD
Org_num: 19336
All begin CEDDRAFT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3255 | 56 aa hypothetical protein | |||
| 3256 | M | M.FspCcI6ORF4613P (99% identity) | M.FspCeDORF3256P | |
| 3257 | S | S.FspCcI6ORF4613P (99% identity) | S.FspCeDORF3256P | |
| 3258 | R | FspCcI6ORF4613P (99% identity) | FspCeDORF3256P | |
| 3259 | Insertion element 4 transposase N-terminal | |||
| 1254 | 76 aa hypothetical protein | |||
| 1255 | M | M.Fsp523ORF1217P (99% identity) | M.FspCeDORF1255P | |
| 1256 | S | S.FspThrORF677P (69% identity) | S.FspCeDORF1255P | |
| 1257 | R | FspThrORF677P (98% identity) | FspCeDORF1255P | |
| 1258 | membrane-fusion protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4315 | 97 aa hypothetical protein | |||
| ??? | M | M.FspThrORF1200P (100% identity) | CCCGGG | M.FspCeDORF4316P |
| 4317 | 105 aa hypothetical protein | |||
| 2115 | protein of unknown function (DUF1998) | |||
| 2116 | M | M.FspThrORF1852P (99% identity) | M.FspCeDORF2116P | |
| 2117 | serine/threonine protein kinase | |||
| 4259 | 132 aa hypothetical protein | |||
| 4260 | RM | FspThrORF4559P (99% identity) | FspCeDORF4260P | |
| 4261 | Transposase IS66 family | |||
| 3781 | 181 aa hypothetical protein | |||
| 3782 | RM | FspThrORF2514P (97% identity) | FspCeDORF3782P | |
| 3783 | DNA/RNA helicase, superfamily II, SNF2 family | |||
| 2913 | 1227 aa hypothetical protein | |||
| 2914 | RM | FspCcI6ORF3450P (98% identity) | FspCeDORF2914P | |
| 2915 | serine/threonine protein kinase | |||
| 2843 | 790 aa hypothetical protein | |||
| 2844 | M | M.Fsp16219ORF1740P (61% identity) | CTSSAG | M.FspCeDORF2844P |
| 2845 | 267 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1214 | Transposase IS66 family | |||
| 1215 | R | 358 aa hypothetical protein | FspCeDMrrP | |
| 1216 | DDE superfamily endonuclease | |||
| 2644 | carbohydrate ABC transporter membrane protein 2, | |||
| 2645 | R | FspThrMcrCP (99% identity) | FspCeDMcrCP | |
| 2646 | R | FspCcI6McrBP (99% identity) | FspCeDMcrBP | |
| 2647 | 414 aa hypothetical protein | |||
| 2090 | 104 aa hypothetical protein | |||
| 2091 | R | FspThrMrr3P (100% identity) | FspCeDMrr3P | |
| 2092 | acetyltransferase, ribosomal protein | |||
| 2102 | 298 aa hypothetical protein | |||
| 2103 | R | Fsp523MrrP (99% identity) | FspCeDMrr2P | |
| 2104 | 393 aa hypothetical protein | |||