Escherichia coli C1-057 |
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Putative Escherichia coli C1-057 RM systems
Ref: Yang,H. et al. Genome Announc 4 (2) (2016)
REBASE ref # 21659
Contig set: 5,580,340 bp
GenBank #: LAZO00000000 (NZ_LAZO00000000)
REBASE acronym: EcoC1057
Org_num: 19074
All begin WY12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10350 | 94 aa hypothetical protein | |||
| 10355 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoC1057ORF10360P |
| 10360 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoC1057ORF10360P |
| 10365 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoC1057ORF10360P |
| 10370 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 24510 | 5-nucleotidase | |||
| 24525 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoC1057ORF24525P | |
| 24530 | TrmB family transcriptional regulator | |||
| 26385 | 73 aa hypothetical protein | |||
| 26390 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoC1057ORF26390P | |
| 26395 | 101 aa hypothetical protein | |||
| 25865 | TrmB family transcriptional regulator | |||
| 25870 | M | M.EcoZ1836ORF13250P (100% identity) | M.EcoC1057ORF25870P | |
| 25875 | 5-nucleotidase | |||
| 3920 | multidrug DMT transporter | |||
| 3925 | V | V.EcosPA8DcmP (100% identity) | V.EcoC1057DcmP | |
| 3930 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoC1057DcmP |
| 3935 | hydrolase | |||
| 8590 | LexA family transcriptional regulator | |||
| 8595 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.EcoC1057ORF8595P |
| 8600 | 162 aa hypothetical protein | |||
| 10640 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoC1057ORF10640P |
| 10645 | helicase | |||
| 10740 | Polarity suppression protein | |||
| 10745 | M | M.EcoZ1836ORF24740P (96% identity) | RGGNCCY | M.EcoC1057ORF10745P |
| ??? | R | EcoS3ORF17765P (100% identity) | RGGNCCY | EcoC1057ORF10745P |
| 10755 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.EcoC1057ORF10745P |
| 10760 | integrase | |||
| 16080 | cell division protein DamX | |||
| 16085 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC1057DamP |
| 16090 | ribulose-phosphate 3-epimerase | |||
| 16615 | 59 aa hypothetical protein | |||
| 16620 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoC1057ORF16620P |
| 16625 | Fis family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10370 | endoribonuclease SymE | |||
| ??? | R | EcoX21GmrDP (100% identity) | EcoC1057GmrDP | |
| 10380 | 293 aa hypothetical protein | |||