Salmonella enterica subsp. enterica serovar Gaminara SA20063285 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Gaminara SA20063285 RM systems
Ref: Yoshida,C. et al. Genome Announc 4 (2) (2016)
REBASE ref # 21646
| Sequence length: | GenBank #: | |
| Chromosome: | 4,975,383 bp | LHSU00000000 (NZ_LHSU00000000) |
| Chromosome: | 4,834,965 bp | CP030288 |
| plasmid pIncI1.1: | 117,908 bp | CP030289 |
REBASE acronym: Sen63285
Org_num: 19092
All begin LFZ12_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20375 | replication protein | |||
| 20380 | M | M.SenK0366ORFCP (100% identity) | M.Sen63285ORF17175P | |
| 20385 | 92 aa hypothetical protein | |||
| 14970 | replication protein | |||
| 14975 | M | M.SenD7795ORFEP (92% identity) | M.Sen63285ORF21775P | |
| 14980 | 177 aa hypothetical protein | |||
| 14985 | nucleoside 2-deoxyribosyltransferase | |||
| 14990 | M | M2.Sens29868ORF15995P (98% identity) | M.Sen63285ORF21760P | |
| 14995 | 79 aa hypothetical protein | |||
| 19570 | 98 aa hypothetical protein | |||
| 19575 | M | M.SenFB23ORF3140P (99% identity) | M.Sen63285ORF6230P | |
| 19580 | endonuclease | |||
| 9565 | 138 aa hypothetical protein | |||
| 9570 | M | M.Sen8273ORF2113P (99% identity) | M.Sen63285ORF9800P | |
| 9575 | 85 aa hypothetical protein | |||
| 23710 | 94 aa hypothetical protein | |||
| 23715 | M | M.SenK0366ORFHP (99% identity) | M.Sen63285ORF25145P | |
| 23720 | 73 aa hypothetical protein | |||
| 9580 | 59 aa hypothetical protein | |||
| 9585 | M | M.Sens29945ORF12870P (100% identity) | M.Sen63285ORF9815P | |
| 9590 | 77 aa hypothetical protein | |||
| 9865 | hydrolase | |||
| 9870 | M | M.Sens24152DcmP (100% identity) | CCWGG | M.Sen63285DcmP |
| 9875 | V | V.StyUK1DcmP (100% identity) | V.Sen63285DcmP | |
| 9880 | multidrug DMT transporter | |||
| 15490 | pseudogene | |||
| 15495 | R | SinI (100% identity) | GGWCC | Sen63285ORF21235P |
| 15500 | M | M.Sens30601ORF19380P (99% identity) | GGWCC | M.Sen63285ORF21235P |
| 15505 | 66 aa hypothetical protein | |||
| 17685 | Fis family transcriptional regulator | |||
| 17690 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen63285ORF2260P |
| 17695 | 54 aa hypothetical protein | |||
| 8795 | cell division protein DamX | |||
| 8800 | M | M.StyTDamP (100% identity) | GATC | M.Sen63285DamP |
| 8805 | ribulose phosphate epimerase | |||
| Chromosome | ||||
| 1735 | cell division protein DamX | |||
| 1740 | M | M.StyTDamP (100% identity) | GATC | M.Sen63285DamP |
| 1745 | ribulose-phosphate 3-epimerase | |||
| 2255 | DUF2556 domain-containing protein | |||
| 2260 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen63285ORF2260P |
| 2265 | Fis family transcriptional regulator | |||
| 6225 | DUF3850 domain-containing protein | |||
| 6230 | M | M.SenFB23ORF3140P (99% identity) | M.Sen63285ORF6230P | |
| 6235 | replication endonuclease | |||
| 9795 | 74 aa hypothetical protein | |||
| 9800 | M | M.Sen8273ORF2113P (99% identity) | M.Sen63285ORF9800P | |
| 9805 | 85 aa hypothetical protein | |||
| 9810 | DUF1187 family protein | |||
| 9815 | M | M.Sens29945ORF12870P (100% identity) | M.Sen63285ORF9815P | |
| 9820 | 77 aa hypothetical protein | |||
| 10130 | phosphohydrolase | |||
| 10135 | M | M.Sens24152DcmP (100% identity) | CCWGG | M.Sen63285DcmP |
| 10140 | V | V.StyUK1DcmP (100% identity) | V.Sen63285DcmP | |
| 10145 | drug/metabolite exporter YedA | |||
| 17170 | replication endonuclease | |||
| 17175 | M | M.SenK0366ORFCP (100% identity) | M.Sen63285ORF17175P | |
| 17180 | 92 aa hypothetical protein | |||
| 21230 | 66 aa hypothetical protein | |||
| 21235 | M | M.Sens30601ORF19380P (99% identity) | GGWCC | M.Sen63285ORF21235P |
| 21240 | R | SinI (100% identity) | GGWCC | Sen63285ORF21235P |
| 21245 | integrase | |||
| 21755 | 79 aa hypothetical protein | |||
| 21760 | M | M2.Sens29868ORF15995P (98% identity) | M.Sen63285ORF21760P | |
| 21765 | DUF4406 domain-containing protein | |||
| 21770 | AsnC family protein | |||
| 21775 | M | M.SenD7795ORFEP (92% identity) | M.Sen63285ORF21775P | |
| 21780 | replication endonuclease | |||
| plasmid pIncI1.1 | ||||
| 25140 | 73 aa hypothetical protein | |||
| 25145 | M | M.SenK0366ORFHP (99% identity) | M.Sen63285ORF25145P | |
| 25150 | 88 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21955 | 33 aa hypothetical protein | |||
| 21960 | R | Sens24152ORF17005P (99% identity) | CAGAG | Sen63285ORF18830P |
| 21965 | M | M.SspsA7ORF16840P (100% identity) | CAGAG | M.Sen63285ORF18830P |
| 21970 | sugar transporter | |||
| Chromosome | ||||
| 18820 | 33 aa hypothetical protein | |||
| ??? | R | Sens24152ORF17005P (99% identity) | CAGAG | Sen63285ORF18830P |
| 18830 | M | M.SspsA7ORF16840P (100% identity) | CAGAG | M.Sen63285ORF18830P |
| 18835 | MFS transporter | |||