Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1896 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1896 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 21729
| Sequence length: | GenBank #: | |
| Chromosome: | 4,856,440 bp | CP014977 |
| plasmid pSTY1-1896: | 147,296 bp | CP014978 |
REBASE acronym: Sen1896
Org_num: 18913
All begin AW99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20250 | restriction endonuclease | |||
| 20255 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1896IIP |
| 20260 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen1896II |
| 20265 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1896II |
| 20270 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1970 | cell division protein DamX | |||
| 1975 | M | DNA adenine methylase | GATC | M.Sen1896Dam |
| 1980 | ribulose-phosphate 3-epimerase | |||
| 2480 | 54 aa hypothetical protein | |||
| 2485 | M | methyltransferase | ATGCAT | M.Sen1896III |
| 2490 | Fis family transcriptional regulator | |||
| 6145 | 221 aa hypothetical protein | |||
| 6150 | M | M.Sens29958ORF6205P (100% identity) | M.Sen1896ORF6150P | |
| 6155 | 217 aa hypothetical protein | |||
| 9370 | hydrolase | |||
| 9375 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1896DcmP |
| 9380 | V | V.StyUK1DcmP (100% identity) | V.Sen1896DcmP | |
| 9385 | drug/metabolite exporter YedA | |||
| 20420 | DNA repair protein | |||
| 20425 | RM | StyUK1IV (100% identity) | GATCAG | Sen1896IV |
| 20430 | 363 aa hypothetical protein | |||
| plasmid pSTY1-1896 | ||||
| 24135 | 100 aa hypothetical protein | |||
| 24140 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Sen1896ORF24140P |
| 24145 | 143 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17735 | 33 aa hypothetical protein | |||
| 17740 | R | StyUK1IP (99% identity) | CAGAG | Sen1896IP |
| 17745 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1896I |
| 17750 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20245 | 95 aa hypothetical protein | |||
| 20250 | R | StyUK1MrrP (100% identity) | Sen1896Mrr2P | |
| 20255 | DEAD/DEAH box helicase | |||